Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10013667 |
Family | PL1 |
Protein Properties | Length: 266 Molecular Weight: 28980.3 Isoelectric Point: 7.6649 |
Chromosome | Chromosome/Scaffold: 317 Start: 455817 End: 456816 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 2 | 183 | 0 |
NSFKTIDGRGSSVHISGGPCITVQFVTNIIIHGIHIHDCKQGGNTNVRDSPRHYGWRTISDGDGVSIFGGSHVWVDHCSLANCNDGLIDAIHGSTAITIS NNYMTHHDKVMLLGHSDTYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVA |
Full Sequence |
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Protein Sequence Length: 266 Download |
MNSFKTIDGR GSSVHISGGP CITVQFVTNI IIHGIHIHDC KQGGNTNVRD SPRHYGWRTI 60 SDGDGVSIFG GSHVWVDHCS LANCNDGLID AIHGSTAITI SNNYMTHHDK VMLLGHSDTY 120 TQDKNMQVTI AFNHFGEGLV QRMPRCRHGY FHVVNNDYTH WEMYAIGGSA NPTINSQGNR 180 FVAPDIRFSK EVTKHEDAPE SEWKNWNWRS EGDMLMNGAF FTASGAGASS SSYAKASSLG 240 ARPSSLVGTI TMASGALNCR RGSRC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 1.0e-25 | 3 | 181 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 4.0e-70 | 1 | 181 | 190 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 6.0e-76 | 1 | 185 | 194 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAQ84042.1 | 0 | 1 | 265 | 155 | 418 | pectate lyase [Malus x domestica] |
GenBank | ABK92535.1 | 0 | 1 | 265 | 11 | 274 | unknown [Populus trichocarpa] |
GenBank | ABV32549.1 | 0 | 1 | 265 | 150 | 413 | pectase lyase [Prunus persica] |
DDBJ | BAE48664.1 | 0 | 1 | 265 | 150 | 413 | Pectate lyase [Prunus mume] |
RefSeq | XP_002322215.1 | 0 | 1 | 265 | 140 | 403 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 5 | 257 | 90 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 5 | 257 | 90 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 2e-18 | 5 | 182 | 70 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1jta_A | 8e-16 | 6 | 230 | 90 | 330 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1jrg_B | 8e-16 | 6 | 230 | 90 | 330 | A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EX663952 | 265 | 1 | 265 | 0 |
GR711159 | 263 | 1 | 263 | 0 |
FF684124 | 258 | 9 | 266 | 0 |
CJ773301 | 266 | 1 | 266 | 0 |
CA785370 | 217 | 1 | 217 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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