y
Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10013701 |
Family | GT47 |
Protein Properties | Length: 461 Molecular Weight: 52605 Isoelectric Point: 7.3259 |
Chromosome | Chromosome/Scaffold: 1168 Start: 117141 End: 119111 |
Description | Exostosin family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 59 | 383 | 0 |
PLVYIYDLPSEFNSGLLQDCAHLNSYTDMCPYVANRGLGQPLGESTWYATHQFIGEMIFHARMENYPCRTLDPTEADLFYIPFYGGLHQSSKAREKNLTV RDQLTVNLAQHLVWLTRRQGRDHFLVLGRTAWDFMRSDNDGGPDYGANGLLRLTALRNVTVLTVERQPWEGGERQVGIPYPSYFHPFNVDQVMTWQKDVK GSRRPYLWSFIGAPRKGGGIAAVRDELMRQCDESKKCMLVNCTMSEENGDRFKCHDPKEVVKVMRQSQFCLQAPGDSYTRRSTFDAVLTGCIPVFFSRHT AYSQYKWYFPEDPTSYSVYMDEKEV |
Full Sequence |
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Protein Sequence Length: 461 Download |
MAKSLVDRRF KPHLYISYLF PLLFLSLCLL FFSLHRFHCP TADNGGNNQK PAACRRGLPL 60 VYIYDLPSEF NSGLLQDCAH LNSYTDMCPY VANRGLGQPL GESTWYATHQ FIGEMIFHAR 120 MENYPCRTLD PTEADLFYIP FYGGLHQSSK AREKNLTVRD QLTVNLAQHL VWLTRRQGRD 180 HFLVLGRTAW DFMRSDNDGG PDYGANGLLR LTALRNVTVL TVERQPWEGG ERQVGIPYPS 240 YFHPFNVDQV MTWQKDVKGS RRPYLWSFIG APRKGGGIAA VRDELMRQCD ESKKCMLVNC 300 TMSEENGDRF KCHDPKEVVK VMRQSQFCLQ APGDSYTRRS TFDAVLTGCI PVFFSRHTAY 360 SQYKWYFPED PTSYSVYMDE KEVIMAGKSV EEELLKIDEK KVEEMRELIV EELMPRLTFA 420 HPNSSSDADK GFEDVVDVAL SGLFNKLVGT SLLSAARGHK * 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03016 | Exostosin | 9.0e-63 | 54 | 397 | 364 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAC42883.1 | 0 | 26 | 443 | 43 | 443 | unknown protein [Arabidopsis thaliana] |
RefSeq | NP_177014.1 | 0 | 26 | 443 | 43 | 443 | exostosin family protein [Arabidopsis thaliana] |
RefSeq | XP_002270383.1 | 0 | 50 | 459 | 116 | 506 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002300452.1 | 0 | 54 | 446 | 1 | 394 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002336132.1 | 0 | 52 | 446 | 20 | 415 | predicted protein [Populus trichocarpa] |