Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10013758 |
Family | CBM43 |
Protein Properties | Length: 473 Molecular Weight: 50663.3 Isoelectric Point: 4.8077 |
Chromosome | Chromosome/Scaffold: 1168 Start: 353646 End: 355477 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 327 | 404 | 1e-29 |
CVAKSNADPDKLKAGLDWACGQGGANCAPVQKGRPCFQPDSYQNHASFAFNDYYQKMHGAGATCDFDGTASITKVDPR | |||
GH17 | 2 | 309 | 0 |
PPASDIVMMLKDKDITHVRLYDADSHMLRALANSSIEVMVGVTNEEVLMIGESPAAAASWINKNIAAYLPSTNITAIAVGSEVLTSVPNLSPVLVPSMQY LHKALVASNLNYQIKVSTPQAMDIIPKPFPPSTATFTNGNNTIYQLLQFLKNTNSYFMLNAYPYYGYTTGNGIFPLDYALFQPLASVKQILDPNTLLHYD SMFDAMVDAAYYAMDALNFSGIPVVVTETGWPTLGGAKEPDATVENAGKYISSLIQRVHNDSGPPSHPSIPINTYIYELFNEDKRPGPESEKNWGLYSPN GTAVYSLS |
Full Sequence |
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Protein Sequence Length: 473 Download |
MPPASDIVMM LKDKDITHVR LYDADSHMLR ALANSSIEVM VGVTNEEVLM IGESPAAAAS 60 WINKNIAAYL PSTNITAIAV GSEVLTSVPN LSPVLVPSMQ YLHKALVASN LNYQIKVSTP 120 QAMDIIPKPF PPSTATFTNG NNTIYQLLQF LKNTNSYFML NAYPYYGYTT GNGIFPLDYA 180 LFQPLASVKQ ILDPNTLLHY DSMFDAMVDA AYYAMDALNF SGIPVVVTET GWPTLGGAKE 240 PDATVENAGK YISSLIQRVH NDSGPPSHPS IPINTYIYEL FNEDKRPGPE SEKNWGLYSP 300 NGTAVYSLSL NGSDGVMSGN STGGMFCVAK SNADPDKLKA GLDWACGQGG ANCAPVQKGR 360 PCFQPDSYQN HASFAFNDYY QKMHGAGATC DFDGTASITK VDPRADISAE VGSDLLSFVY 420 FWTSSNSSGG GDMFSPTAFG PVSPQFGTSL KLVASRSRVA VPAAVLGLVF LV* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 2.0e-5 | 221 | 301 | 84 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 1.0e-19 | 327 | 397 | 76 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 1.0e-32 | 326 | 403 | 78 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 8.0e-77 | 2 | 309 | 309 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAB01763.1 | 0 | 1 | 449 | 1 | 438 | beta-1,3-glucanase-like protein [Arabidopsis thaliana] |
DDBJ | BAH57260.1 | 0 | 1 | 403 | 37 | 439 | AT3G13560 [Arabidopsis thaliana] |
EMBL | CAN72077.1 | 0 | 1 | 403 | 37 | 438 | hypothetical protein [Vitis vinifera] |
RefSeq | NP_187965.1 | 0 | 1 | 449 | 37 | 474 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
RefSeq | XP_002297638.1 | 0 | 1 | 471 | 1 | 461 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2cyg_A | 0 | 1 | 310 | 12 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 1ghs_B | 0 | 1 | 310 | 12 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 1ghs_A | 0 | 1 | 310 | 12 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 3f55_D | 0 | 1 | 310 | 13 | 315 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
PDB | 3f55_C | 0 | 1 | 310 | 13 | 315 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
JG221796 | 235 | 239 | 473 | 0 |
JG221680 | 235 | 239 | 473 | 0 |
BG648951 | 263 | 21 | 282 | 0 |
DV150956 | 250 | 18 | 266 | 0 |
JG174179 | 235 | 239 | 473 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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