Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10013780 |
Family | GH28 |
Protein Properties | Length: 403 Molecular Weight: 41931.9 Isoelectric Point: 7.7068 |
Chromosome | Chromosome/Scaffold: 1168 Start: 450295 End: 451592 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 71 | 391 | 0 |
KEACASTAPATVLIPPGNYLCGQTDLKAPCTAPSITFQVQGTIRAPSNIAGDTWFLFDNINNLNIVGGGIFDGQGPTCYKTKKSVAVSIRLNYVTNAMIQ GITSRDSKQFHFIVIGGKNITFDQLTITAAGDSPNTDGIHLGRASQINILNTNIGTGDDCISVGDGVSDLNVQNVTCGPGHGIAVGSLGRYANEAPVKGI HFKNCTLTNTCNGVRIKSWPDLETGSATDISFEDIIMNNVSFPIVIDQVYCPWNTCKKTGLPSKVKISGVTYNNIQGTSATPQIIQMNCSSANPCEDVKL SNINIQSPTGPAVSACANVKP |
Full Sequence |
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Protein Sequence Length: 403 Download |
MKKTGSIMTT LLLLLLVTFA NVVSAQRGAA QPGMPVGGAA PPAGGVFDIC KYGAVADEKT 60 DITQALTKAF KEACASTAPA TVLIPPGNYL CGQTDLKAPC TAPSITFQVQ GTIRAPSNIA 120 GDTWFLFDNI NNLNIVGGGI FDGQGPTCYK TKKSVAVSIR LNYVTNAMIQ GITSRDSKQF 180 HFIVIGGKNI TFDQLTITAA GDSPNTDGIH LGRASQINIL NTNIGTGDDC ISVGDGVSDL 240 NVQNVTCGPG HGIAVGSLGR YANEAPVKGI HFKNCTLTNT CNGVRIKSWP DLETGSATDI 300 SFEDIIMNNV SFPIVIDQVY CPWNTCKKTG LPSKVKISGV TYNNIQGTSA TPQIIQMNCS 360 SANPCEDVKL SNINIQSPTG PAVSACANVK PIVTGTIPPG CA* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 2.0e-60 | 46 | 401 | 375 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 4.0e-64 | 49 | 401 | 371 | + polygalacturonase ADPG | ||
PLN02155 | PLN02155 | 6.0e-67 | 46 | 399 | 368 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 5.0e-93 | 74 | 390 | 326 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 2.0e-97 | 47 | 402 | 369 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ADC53480.1 | 0 | 49 | 400 | 36 | 398 | polygalacturonase [Gossypium hirsutum] |
DDBJ | BAA89476.1 | 0 | 39 | 397 | 23 | 388 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89477.1 | 0 | 39 | 397 | 23 | 388 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89478.1 | 0 | 39 | 397 | 23 | 388 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89479.1 | 0 | 39 | 397 | 23 | 388 | polygalacturonase [Salix gilgiana] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ib4_B | 2e-18 | 131 | 389 | 82 | 333 | I Chain I, Homology Model For The Spinach Chloroplast 30s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome |
PDB | 1ib4_A | 2e-18 | 131 | 389 | 82 | 333 | I Chain I, Homology Model For The Spinach Chloroplast 30s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome |
PDB | 1ia5_A | 2e-18 | 131 | 389 | 82 | 333 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
PDB | 1rmg_A | 2e-16 | 48 | 382 | 22 | 345 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 2iq7_G | 2e-16 | 71 | 389 | 15 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |