y
Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10014035 |
Family | CE10 |
Protein Properties | Length: 375 Molecular Weight: 42808.5 Isoelectric Point: 10.1394 |
Chromosome | Chromosome/Scaffold: 1247 Start: 92766 End: 96795 |
Description | Ribosomal protein L18ae/LX family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE10 | 14 | 182 | 1.10002e-41 |
ETTVQSKDVPYSLDPNLQARLYLPKETKPGQKLPLLVYYHGGGFVIETAFSPTYHNHLNILVAEANVVAVSVDYRRAPESPLPIPYEDCWAALKWAGSHA GGSGPEQWLNDHVDFGSVFLAGDSAGANIVHHVAMWFGQEEIEGISRMKGLVLVHPYFARKEPIGKEER |
Full Sequence |
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Protein Sequence Length: 375 Download |
MGTETVPASL SDPETTVQSK DVPYSLDPNL QARLYLPKET KPGQKLPLLV YYHGGGFVIE 60 TAFSPTYHNH LNILVAEANV VAVSVDYRRA PESPLPIPYE DCWAALKWAG SHAGGSGPEQ 120 WLNDHVDFGS VFLAGDSAGA NIVHHVAMWF GQEEIEGISR MKGLVLVHPY FARKEPIGKE 180 ERLPKAILIS LVCSAKMVAY RYHQYQVVGR ALPTESDEHP KIYRMKLWHT NEVRAKSKFW 240 YFLRKLKKVK KSNGQMLAIN EIFEKNPTKI KNYGIWLRYQ SRTGYHNMYK EFRDTTLNGA 300 VEQMYDEMAS RHRVRSPCIQ IIKTATIPAK LCKRESTKQF HNSKIKFPLV FKKVRPPTRK 360 LKTTYKASRP NLFV* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam01775 | Ribosomal_L18ae | 2.0e-15 | 278 | 320 | 43 | + Ribosomal L18ae/LX protein domain. This family includes eukaryotic L18ae as well as archaebacterial specific LX. Ribosomal protein L18ae forms part of the 60S ribosomal subunit. | ||
COG2157 | RPL20A | 5.0e-16 | 264 | 348 | 85 | + Ribosomal protein L20A (L18A) [Translation, ribosomal structure and biogenesis] | ||
COG0657 | Aes | 1.0e-25 | 8 | 169 | 163 | + Esterase/lipase [Lipid metabolism] | ||
pfam07859 | Abhydrolase_3 | 2.0e-42 | 49 | 220 | 172 | + alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes. |
Gene Ontology | |
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GO Term | Description |
GO:0003735 | structural constituent of ribosome |
GO:0005840 | ribosome |
GO:0006412 | translation |
GO:0008152 | metabolic process |
GO:0016787 | hydrolase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK93213.1 | 0 | 197 | 374 | 1 | 178 | unknown [Populus trichocarpa] |
GenBank | ABK94361.1 | 0 | 197 | 374 | 1 | 178 | unknown [Populus trichocarpa] |
GenBank | ACU14501.1 | 0 | 197 | 374 | 1 | 178 | unknown [Glycine max] |
RefSeq | XP_002300869.1 | 0 | 197 | 374 | 1 | 178 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002317384.1 | 0 | 197 | 374 | 1 | 178 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3izr_S | 0 | 197 | 374 | 1 | 178 | PP Chain p, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome |
PDB | 3izs_S | 0 | 197 | 363 | 1 | 167 | PP Chain p, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome |
PDB | 3j3b_S | 0 | 204 | 373 | 9 | 175 | L Chain L, Structure Of The Human 60s Ribosomal Proteins |
PDB | 3j39_S | 0 | 204 | 361 | 9 | 166 | H Chain H, Structure Of The D. Melanogaster 60s Ribosomal Proteins |
PDB | 4a1d_X | 0 | 201 | 373 | 17 | 189 | H Chain H, Structure Of The D. Melanogaster 60s Ribosomal Proteins |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
JG255651 | 198 | 178 | 375 | 0 |
JG263878 | 198 | 178 | 375 | 0 |
JG141798 | 198 | 178 | 375 | 0 |
JG141423 | 198 | 178 | 375 | 0 |
JG135834 | 198 | 178 | 375 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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