Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10014414 |
Family | PL1 |
Protein Properties | Length: 472 Molecular Weight: 51542.5 Isoelectric Point: 5.1207 |
Chromosome | Chromosome/Scaffold: 176 Start: 358211 End: 361167 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 130 | 328 | 0 |
IVFPSNMLIKLKQELIFNSFKTLDGRGANVHIEGGGCITLQYISNVIIHNIHIHHCVPSGNTNVRSSPTHYGYRTKSDGDGISIFGAKDIWIDHCTLSHC TDGLIDAVMGSTGITISNNYFSHHNEVMLLGHSDDYSPDTGMQVTIAFNHFGEQLVQRMPRCRRGYIHVVNNDFTEWEMYAIGGSGHPTINSQGNRYVA |
Full Sequence |
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Protein Sequence Length: 472 Download |
MGNAATELGW AMQLNLTFPS PHPDPEFVAQ EVQRRVNASI SRRETLQISQ KDQSSACFTG 60 NPIDDCWKCD PDWPNNRQRL ADCAIGFGQY AMGGKNGEYY IVTDSSDDDA VNPKPGTLRY 120 AVIQEEPLWI VFPSNMLIKL KQELIFNSFK TLDGRGANVH IEGGGCITLQ YISNVIIHNI 180 HIHHCVPSGN TNVRSSPTHY GYRTKSDGDG ISIFGAKDIW IDHCTLSHCT DGLIDAVMGS 240 TGITISNNYF SHHNEVMLLG HSDDYSPDTG MQVTIAFNHF GEQLVQRMPR CRRGYIHVVN 300 NDFTEWEMYA IGGSGHPTIN SQGNRYVAPS NPNAKEVTKR LDSGDGEWKG WNWRSEGDVM 360 VNGAFFVSSG EELEVKYEKA YSVEPKSVDL IGMLTLHAGA LGVGGRENNL GMWSTGPNGG 420 TPGLGSSDDY SDDYAASGGG TPPPSPSLLT FAVAILCFIS CYTTIAFTSM L* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 3.0e-23 | 93 | 332 | 258 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 1.0e-61 | 141 | 326 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 1.0e-72 | 135 | 330 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAM61400.1 | 0 | 21 | 469 | 33 | 475 | pectate lyase-like protein [Arabidopsis thaliana] |
EMBL | CAB64222.1 | 0 | 21 | 469 | 14 | 456 | pectate lyase-like protein [Arabidopsis thaliana] |
RefSeq | NP_566979.1 | 0 | 21 | 469 | 34 | 476 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | XP_002265853.1 | 0 | 15 | 415 | 139 | 537 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002519460.1 | 0 | 15 | 471 | 25 | 483 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 61 | 401 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 61 | 401 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 1e-16 | 130 | 317 | 50 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.0000000000002 | 154 | 301 | 138 | 299 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pe9_B | 0.0000000000003 | 174 | 400 | 115 | 358 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |