| Basic Information | |
|---|---|
| Species | Linum usitatissimum |
| Cazyme ID | Lus10014642 |
| Family | CBM22 |
| Protein Properties | Length: 581 Molecular Weight: 64729.7 Isoelectric Point: 6.8752 |
| Chromosome | Chromosome/Scaffold: 398 Start: 415499 End: 417718 |
| Description | Glycosyl hydrolase family 10 protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM22 | 40 | 158 | 2.5e-21 |
| IIVNPDMNNGMTGWTRFGNPTLENRTAASNINTFVVAHSRSAHFDSVSQTVYLHSHLLYTFSAWVQVNQGNVHVTATFKTSDGSFLRAGGAVAESGCWSM LKGGLTVNTSGQANLYFHT | |||
| GH10 | 218 | 482 | 0 |
| KSSRFQLGCAMNKNILTNQAYKKWFTSRRFGVTTFEDEMKWYSTEQSRGHEDYSAADSMLKFAKMHNIAVRGHNVLWDDPHYQPGWLTSLSGPEFAAAVN RRINSVVSRYKGQLISWDVVNEDVHFSFFESKLGAQASGNAYRMAHRVDPDTPLFINDFNTIEESRDGVSVPGKYLQKLREVSRFSDNVRIKFGIGLEAH FGGTPNIPYMRSSIDTLAAAGIPIWLTEVDVKSCPDQAGYLEQVLREGHGHPKVDGMVLWAAWKP | |||
| Full Sequence |
|---|
| Protein Sequence Length: 581 Download |
| MHLLLIFCSL LSSVRGLPYD YTASIECLEV PNKAQYGGGI IVNPDMNNGM TGWTRFGNPT 60 LENRTAASNI NTFVVAHSRS AHFDSVSQTV YLHSHLLYTF SAWVQVNQGN VHVTATFKTS 120 DGSFLRAGGA VAESGCWSML KGGLTVNTSG QANLYFHTHN STADIWIDSV SLQPFTQQEW 180 TSHHHQTIQQ IRKRKVRIQT VNKQGTPLRN AKVSINRKSS RFQLGCAMNK NILTNQAYKK 240 WFTSRRFGVT TFEDEMKWYS TEQSRGHEDY SAADSMLKFA KMHNIAVRGH NVLWDDPHYQ 300 PGWLTSLSGP EFAAAVNRRI NSVVSRYKGQ LISWDVVNED VHFSFFESKL GAQASGNAYR 360 MAHRVDPDTP LFINDFNTIE ESRDGVSVPG KYLQKLREVS RFSDNVRIKF GIGLEAHFGG 420 TPNIPYMRSS IDTLAAAGIP IWLTEVDVKS CPDQAGYLEQ VLREGHGHPK VDGMVLWAAW 480 KPQGCYRMCL TDNEFRNLPT GDVVDKLLGE WGGHGYLGET DEDGYLETSL FHGEYEVVIS 540 HPDLFGNSTT TMAKGLSVAP THVDDDDDGT GNPLILQMVA * 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02018 | CBM_4_9 | 0.001 | 38 | 158 | 129 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| COG3693 | XynA | 2.0e-38 | 245 | 448 | 217 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| pfam00331 | Glyco_hydro_10 | 2.0e-51 | 219 | 477 | 279 | + Glycosyl hydrolase family 10. | ||
| smart00633 | Glyco_10 | 3.0e-78 | 256 | 504 | 274 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAN10199.1 | 0 | 5 | 550 | 20 | 561 | endoxylanase [Carica papaya] |
| RefSeq | NP_195110.3 | 0 | 15 | 542 | 21 | 546 | glycosyl hydrolase family 10 protein [Arabidopsis thaliana] |
| RefSeq | XP_002264556.1 | 0 | 16 | 548 | 109 | 633 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002313180.1 | 0 | 25 | 551 | 1 | 522 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002532418.1 | 0 | 13 | 579 | 17 | 567 | Endo-1,4-beta-xylanase C precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nq6_A | 3e-29 | 224 | 504 | 15 | 298 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1v0n_A | 1e-26 | 218 | 477 | 11 | 266 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1v0m_A | 1e-26 | 218 | 477 | 11 | 266 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1v0l_A | 1e-26 | 218 | 477 | 11 | 266 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1v0k_A | 1e-26 | 218 | 477 | 11 | 266 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
