Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10014826 |
Family | GH28 |
Protein Properties | Length: 495 Molecular Weight: 53112.8 Isoelectric Point: 7.3957 |
Chromosome | Chromosome/Scaffold: 184 Start: 436381 End: 438989 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 161 | 480 | 0 |
DEFLVNPVMFRGPCNSRHLHFQVGANVVAPNKTEAWGDNREAWIGFVNVDGLSLNGGGSFDGRGLIWWHLCNTQRNCTRPTALFFNNCNRLRVSKLRHLN SPRNHIGVASSSNVKISNLHISAPEDSPNTDGIDISGSTYIYVEDTFIRTGDDCIAVNGFSSYITISKVVCGPGHGISVGSLGEDGAYQTVSDVHVKDCV FNRTLNGARIKTWKGGSGYVKKIKFERITLIDSGNPIIINQDYVDNSSLGPAPGSNIQISEVSYDGVVGTSSEGRSIYFNCEQGSSGMGCTDIFVNNVHI SAGTPGVERLYAVCINAHGN |
Full Sequence |
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Protein Sequence Length: 495 Download |
MFSGCSKAME AKYVITRSSL GSGFSLLLML LLFPHTCSCS SSSPRLLDNI SRSSSSSSNI 60 FNVLDYGAVG DGKTDDSQRS WVRSPECVRR APVTTPSVSP GLTIDSLEIY LTATSLNVVP 120 VERVLRAFLK AWKDACGAEV AGGGIGIPTV VLPRRPSKED DEFLVNPVMF RGPCNSRHLH 180 FQVGANVVAP NKTEAWGDNR EAWIGFVNVD GLSLNGGGSF DGRGLIWWHL CNTQRNCTRP 240 TALFFNNCNR LRVSKLRHLN SPRNHIGVAS SSNVKISNLH ISAPEDSPNT DGIDISGSTY 300 IYVEDTFIRT GDDCIAVNGF SSYITISKVV CGPGHGISVG SLGEDGAYQT VSDVHVKDCV 360 FNRTLNGARI KTWKGGSGYV KKIKFERITL IDSGNPIIIN QDYVDNSSLG PAPGSNIQIS 420 EVSYDGVVGT SSEGRSIYFN CEQGSSGMGC TDIFVNNVHI SAGTPGVERL YAVCINAHGN 480 YNSSFPTVPC LSPL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 5.0e-71 | 60 | 490 | 438 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 8.0e-72 | 163 | 478 | 318 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 4.0e-79 | 126 | 492 | 372 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 3.0e-88 | 59 | 492 | 437 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 2.0e-93 | 60 | 468 | 413 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAY21049.1 | 0 | 61 | 492 | 30 | 397 | PGN [Glycine max] |
GenBank | ABO81149.1 | 0 | 64 | 492 | 1 | 369 | Glycoside hydrolase, family 28 [Medicago truncatula] |
RefSeq | NP_197222.1 | 0 | 17 | 491 | 2 | 419 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002324855.1 | 0 | 60 | 492 | 26 | 395 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515526.1 | 0 | 60 | 492 | 27 | 393 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 8e-26 | 212 | 463 | 72 | 321 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 8e-26 | 212 | 463 | 72 | 321 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 8e-26 | 212 | 463 | 72 | 321 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 8e-26 | 212 | 463 | 72 | 321 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 8e-26 | 212 | 463 | 72 | 321 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |