Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10014887 |
Family | PL1 |
Protein Properties | Length: 407 Molecular Weight: 45133.6 Isoelectric Point: 7.4711 |
Chromosome | Chromosome/Scaffold: 147 Start: 393244 End: 394464 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 116 | 322 | 0 |
VIQDEPLWIVFQRDMVITLKQELVMNSFKTIDGRGASVHVAGGPCITIHHTTNIIIHGINIHDCKQGGNANIRDSPRHYGWWTPSDGDGISVFASKNIWI DHCTMSNCRDGLIDVIHGSTAVTISNNHFTHHDKVMLLGHKDSYTEDKNMQVTIAFNHFGEGLVQRMPRCRNGYFHVVNNDYTHWEMYAIGGSASPTINS QGNRFLA |
Full Sequence |
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Protein Sequence Length: 407 Download |
MASLPLLILA LFFSSLYPHL SSATVQDPDL VVEDFHRAMN ASRRKLSYLS CGTGNPMDDC 60 WRCNPNWSTN RQRLADCAIG FGKNALGGRD GRIYVVTDPN DDDPVSPRPG TLRHAVIQDE 120 PLWIVFQRDM VITLKQELVM NSFKTIDGRG ASVHVAGGPC ITIHHTTNII IHGINIHDCK 180 QGGNANIRDS PRHYGWWTPS DGDGISVFAS KNIWIDHCTM SNCRDGLIDV IHGSTAVTIS 240 NNHFTHHDKV MLLGHKDSYT EDKNMQVTIA FNHFGEGLVQ RMPRCRNGYF HVVNNDYTHW 300 EMYAIGGSAS PTINSQGNRF LAPYDRSKKE VTKHEDAPES EWRNWNWRSE GDLLLNGAFF 360 RQSGAGEFSH SGTYARASSL SARPASFVAA MTTTAGALSC RKGSHC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam13229 | Beta_helix | 0.004 | 200 | 250 | 51 | + Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases. | ||
COG3866 | PelB | 2.0e-26 | 180 | 320 | 154 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 1.0e-66 | 135 | 320 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 3.0e-71 | 129 | 323 | 206 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF63756.1 | 0 | 21 | 406 | 16 | 398 | AF243475_1 pectate lyase [Vitis vinifera] |
GenBank | ADB90475.1 | 0 | 26 | 406 | 34 | 411 | pectate lyase [Gossypium herbaceum] |
GenBank | ADB90476.1 | 0 | 26 | 406 | 34 | 411 | pectate lyase [Gossypium raimondii] |
RefSeq | XP_002300069.1 | 0 | 1 | 406 | 1 | 403 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002526952.1 | 0 | 2 | 406 | 3 | 396 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 55 | 399 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 55 | 399 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 1e-19 | 124 | 322 | 50 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.000000000000004 | 127 | 333 | 122 | 343 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1bn8_A | 0.00000000000006 | 145 | 297 | 151 | 316 | A Chain A, Bacillus Subtilis Pectate Lyase |