| Basic Information | |
|---|---|
| Species | Linum usitatissimum |
| Cazyme ID | Lus10015012 |
| Family | AA3 |
| Protein Properties | Length: 583 Molecular Weight: 64350.9 Isoelectric Point: 9.8714 |
| Chromosome | Chromosome/Scaffold: 2022 Start: 471856 End: 474777 |
| Description | Glucose-methanol-choline (GMC) oxidoreductase family protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| AA3 | 38 | 565 | 0 |
| VAFYDYIIIGGGTAGCPLAATLSQHAAVLVLERGGSPYNNSDITDVANFVSTIADASPSSPFQTFISEDGVYNTRARVLGGGSAIGVGFYSRAEANYVRR AGLDKELVRRSYEWVEWKVGFKPQVTRWQTTVREGMVETGVGPANGFTYAHDYGTKIGGTTFDRMGHRHSAADLLEYARPRNIKVYLHATVTKILFRRVR RWPRPIAYGVVYKDSMGNRKKAILKPHPHNEVILAAGAIGSPQLMMLSGIGPGLHLRSHGIQVVLDQPYVGHGMADNPMNLLYVPSPVPVETSLVQVVGI PYRQNSYIETASGLSFAYSWAQGFARDYVSFFNKTGKPSSLTAETITRAIETVHAYANMSQTTGGVILQKVKGPLSSGDLKLRSKSPNENPSVSFNYYRS PPDLEGCVEGMRSIMRLINSPSFAKFRYPHLSAQALVDLILNLPVNLRPRHVSSSISLEQFCKDTVMTMWDYHGGCQVGRVVDPEYRVLGVDRLRVVDGS TLLRSPGTNPQATVMMLGRYMGTKILRE | |||
| Full Sequence |
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| Protein Sequence Length: 583 Download |
| MRLLAALLAV NFFLHCFCNS EKAPCFSFVQ EATKAPPVAF YDYIIIGGGT AGCPLAATLS 60 QHAAVLVLER GGSPYNNSDI TDVANFVSTI ADASPSSPFQ TFISEDGVYN TRARVLGGGS 120 AIGVGFYSRA EANYVRRAGL DKELVRRSYE WVEWKVGFKP QVTRWQTTVR EGMVETGVGP 180 ANGFTYAHDY GTKIGGTTFD RMGHRHSAAD LLEYARPRNI KVYLHATVTK ILFRRVRRWP 240 RPIAYGVVYK DSMGNRKKAI LKPHPHNEVI LAAGAIGSPQ LMMLSGIGPG LHLRSHGIQV 300 VLDQPYVGHG MADNPMNLLY VPSPVPVETS LVQVVGIPYR QNSYIETASG LSFAYSWAQG 360 FARDYVSFFN KTGKPSSLTA ETITRAIETV HAYANMSQTT GGVILQKVKG PLSSGDLKLR 420 SKSPNENPSV SFNYYRSPPD LEGCVEGMRS IMRLINSPSF AKFRYPHLSA QALVDLILNL 480 PVNLRPRHVS SSISLEQFCK DTVMTMWDYH GGCQVGRVVD PEYRVLGVDR LRVVDGSTLL 540 RSPGTNPQAT VMMLGRYMGT KILRERLPLY LRRPPWHIPP RD* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK02106 | PRK02106 | 6.0e-21 | 203 | 313 | 113 | + choline dehydrogenase; Validated | ||
| TIGR03970 | Rv0697 | 5.0e-22 | 42 | 555 | 553 | + dehydrogenase, Rv0697 family. This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function. | ||
| TIGR01810 | betA | 3.0e-27 | 42 | 555 | 562 | + choline dehydrogenase. Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both gram-positive and gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti, this enzyme is found associated in a transciptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other gram-positive organisms have been shown to employ a different enzymatic system, utlizing a soluable choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified [Cellular processes, Adaptations to atypical conditions]. | ||
| COG2303 | BetA | 1.0e-30 | 41 | 556 | 572 | + Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | ||
| PLN02785 | PLN02785 | 0 | 41 | 562 | 532 | + Protein HOTHEAD | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI34759.1 | 0 | 15 | 567 | 21 | 572 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_200008.1 | 0 | 1 | 566 | 6 | 576 | glucose-methanol-choline (GMC) oxidoreductase family protein [Arabidopsis thaliana] |
| RefSeq | XP_002267807.1 | 0 | 5 | 566 | 11 | 559 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002267848.1 | 0 | 5 | 566 | 11 | 559 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002510860.1 | 0 | 2 | 567 | 7 | 571 | glucose-methanol-choline (gmc) oxidoreductase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3gdp_B | 0 | 26 | 566 | 12 | 517 | A Chain A, Crystal Structure Of Class V Chitinase From Nicotiana Tobaccum |
| PDB | 3gdp_A | 0 | 26 | 566 | 12 | 517 | A Chain A, Crystal Structure Of Class V Chitinase From Nicotiana Tobaccum |
| PDB | 3gdn_B | 0 | 26 | 566 | 12 | 517 | A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde |
| PDB | 3gdn_A | 0 | 26 | 566 | 12 | 517 | A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde |
| PDB | 1ju2_B | 0 | 26 | 566 | 12 | 517 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
