Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10015359 |
Family | PL1 |
Protein Properties | Length: 276 Molecular Weight: 30840.1 Isoelectric Point: 9.1997 |
Chromosome | Chromosome/Scaffold: 635 Start: 119065 End: 119963 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 2 | 193 | 0 |
NIKLNKELIMTSNKTIDGRGANVHIAFGAGITIQFVCNVIIHGIQIHHIVATSGGLIRDSVDHYGHRTQSDGDGISIFGSSNVWIDHVSMSRCTDGLIDA IQGSTAITISNSHFTHHNDAILLGASDSFSGDQFMQITVAYNHFGQGLVQRMPRCRWGFFHVVNNDYTHWRLYAIGGSKHPTIISQGNQFIA |
Full Sequence |
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Protein Sequence Length: 276 Download |
MNIKLNKELI MTSNKTIDGR GANVHIAFGA GITIQFVCNV IIHGIQIHHI VATSGGLIRD 60 SVDHYGHRTQ SDGDGISIFG SSNVWIDHVS MSRCTDGLID AIQGSTAITI SNSHFTHHND 120 AILLGASDSF SGDQFMQITV AYNHFGQGLV QRMPRCRWGF FHVVNNDYTH WRLYAIGGSK 180 HPTIISQGNQ FIAPHEKELK QVTKRDYAEE HEWRTWIWKS EKDHFLNGAY FIESGETSLR 240 PNPAKKFMIT PKPGVLATKM TRFAGALHCK PRKKC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 8.0e-22 | 13 | 191 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 2.0e-51 | 8 | 191 | 207 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 1.0e-61 | 1 | 194 | 205 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002270089.1 | 0 | 1 | 275 | 165 | 443 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002272638.1 | 0 | 1 | 275 | 79 | 351 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002306040.1 | 0 | 1 | 275 | 159 | 432 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002311599.1 | 0 | 1 | 275 | 154 | 429 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002323835.1 | 0 | 1 | 275 | 179 | 452 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 1 | 267 | 76 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 1 | 267 | 76 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pcl_A | 2e-16 | 4 | 265 | 71 | 351 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
PDB | 3zsc_A | 2e-16 | 7 | 182 | 62 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 4e-16 | 4 | 191 | 120 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |