Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10015371 |
Family | GT5 |
Protein Properties | Length: 749 Molecular Weight: 82786 Isoelectric Point: 5.0113 |
Chromosome | Chromosome/Scaffold: 635 Start: 185457 End: 189015 |
Description | starch synthase 2 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT5 | 273 | 741 | 0 |
NVILVAAECAPWSKTGGLGDVAGSLPKALARRGHRVMVVAPRYGAYLEPENTGIRKIYKVDGQDLEITYFQAYINGVDFVFIDGPLFRHIENNIYGGNRM VPWHVPCGGVCYGDGNLVFIANDWHTALLPVYLKAYYRDNGFMQFTRSVLVIHNIAHQGRGPVDDFKYVDLPGSYIDLFKWYDPVGGEHFNIFAAGLKAA DRVVTVSHGYAWELKTLEGGWGLHSIINENDWKLRGIVNGIDTQEWNPQNDVHLTSDGYANYSLETLETGKPKCKAALQKELGLPERPDVPLIGFIGRLD NQKGVDLIAEAIPWMVEQDVQLVMLGTGRQDLEQMLRQFESQYGDKVRGWVGFSVKTAHRITAGADILLMPSRFEPCGLNQLYAMTYGTIPVVHAVGGLR DTVEPFDPFNESGLGWTFDSAEASKLIHALGNCLWTYRDFKRSWAGLQRRGMEQDLSWDHAAQLYEEVL |
Full Sequence |
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Protein Sequence Length: 749 Download |
MASAGPFPSL TEVRVETCAL FRCKKNQNGP KIPFFCCRLN KTPTNLGLAG GDRLSPRFKG 60 LRATGKDAEK NGDQSDDALQ ATIEKSKKVL AVQRDLLQQI AERRKLVSSI NENNLNPEAN 120 DESLLTNVEP TSASAKDASS LDDELATTIS GNEDSQHRKN PRPSGGFSTE NGTVQLNEQA 180 SIFSQVFTTS NVKREDVNES TLPEMSSSFD DSMAHVDDDT VSFLSTSSTI STINNMQTEY 240 VTESSPQATN DVKGDSYVED ATPPPLAGPN VMNVILVAAE CAPWSKTGGL GDVAGSLPKA 300 LARRGHRVMV VAPRYGAYLE PENTGIRKIY KVDGQDLEIT YFQAYINGVD FVFIDGPLFR 360 HIENNIYGGN RMVPWHVPCG GVCYGDGNLV FIANDWHTAL LPVYLKAYYR DNGFMQFTRS 420 VLVIHNIAHQ GRGPVDDFKY VDLPGSYIDL FKWYDPVGGE HFNIFAAGLK AADRVVTVSH 480 GYAWELKTLE GGWGLHSIIN ENDWKLRGIV NGIDTQEWNP QNDVHLTSDG YANYSLETLE 540 TGKPKCKAAL QKELGLPERP DVPLIGFIGR LDNQKGVDLI AEAIPWMVEQ DVQLVMLGTG 600 RQDLEQMLRQ FESQYGDKVR GWVGFSVKTA HRITAGADIL LMPSRFEPCG LNQLYAMTYG 660 TIPVVHAVGG LRDTVEPFDP FNESGLGWTF DSAEASKLIH ALGNCLWTYR DFKRSWAGLQ 720 RRGMEQDLSW DHAAQLYEEV LVAAKYQW* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PRK14099 | PRK14099 | 7.0e-85 | 272 | 745 | 503 | + glycogen synthase; Provisional | ||
COG0297 | GlgA | 6.0e-132 | 272 | 746 | 502 | + Glycogen synthase [Carbohydrate transport and metabolism] | ||
PRK00654 | glgA | 9.0e-171 | 272 | 741 | 500 | + glycogen synthase; Provisional | ||
TIGR02095 | glgA | 0 | 272 | 744 | 490 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
cd03791 | GT1_Glycogen_synthase_DULL1_like | 0 | 273 | 741 | 484 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. |
Gene Ontology | |
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GO Term | Description |
GO:0009058 | biosynthetic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF13168.1 | 0 | 1 | 748 | 1 | 751 | AF173900_1 granule bound starch synthase II precursor [Manihot esculenta] |
GenBank | ABV25894.1 | 0 | 1 | 748 | 1 | 751 | starch synthase isoform II [Manihot esculenta] |
RefSeq | XP_002278470.1 | 0 | 59 | 748 | 70 | 772 | PREDICTED: similar to starch synthase [Vitis vinifera] |
RefSeq | XP_002324061.1 | 0 | 1 | 748 | 1 | 742 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002531856.1 | 0 | 1 | 748 | 1 | 754 | starch synthase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3vuf_A | 0 | 272 | 742 | 10 | 509 | A Chain A, Arabidopsis Thaliana Peroxidase N |
PDB | 3vue_A | 0 | 272 | 742 | 10 | 509 | A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I Catalytic Domain |
PDB | 3d1j_A | 0 | 272 | 740 | 1 | 472 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 3guh_A | 0 | 272 | 747 | 1 | 479 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 2r4u_A | 0 | 272 | 747 | 1 | 479 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO777841 | 319 | 431 | 749 | 0 |
HO777841 | 399 | 61 | 438 | 0 |
HO781048 | 377 | 373 | 749 | 0 |
HO445868 | 438 | 327 | 749 | 0 |
HO781048 | 41 | 331 | 371 | 0.039 |
Sequence Alignments (This image is cropped. Click for full image.) |
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