Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10015623 |
Family | AA3 |
Protein Properties | Length: 1107 Molecular Weight: 122274 Isoelectric Point: 7.1168 |
Chromosome | Chromosome/Scaffold: 630 Start: 87344 End: 98105 |
Description | Glucose-methanol-choline (GMC) oxidoreductase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA3 | 564 | 1097 | 0 |
PNTLYDYIIVGGGTAGCPLAATLSQNFTVLLLERGGVPFANPNVTFLKNFHITLADTSPTSASQFFVSNDGVLNSRARVLGGGTSINAGFYTRASQRFIE KVGWDTRLVNQSYPWVEQQIVHKPQVAQWQLAVRDSLLDLGISPDNGFTYDHISGTKFGGTIFDRFGRRHTSAELLATANSQALTVLVHATVQKVLFDTN APNSTTSPRAVGVEFKDETGKYHRALLRDDDGTKSEVILSCGAIGTPQMLLLSGIGPRNDLEKLNISVVVENIHVGQGMADNPMNSIFVPSNEPVNQSLI QTVGITKLGVYIEASSGFGQSNDSIQCHHGIMSAEIGQISTIPPKQRTPEAIRAYINKKKDLPYEAFKGGFILEKIANPFSKGQLTLIDTNVDQNPSVTF NYFSDPRDLQRCVEGVRLATKIVQTKRFTEMVKCDSQTVEKILNASVHANVNLVPKQANDTESLEQFCKDTVISIWHYHGGCHVGKVVDSEYKVLGVDRL RVVDGSTFNESPGTNPQATVLMMGRYMGLKILEE |
Full Sequence |
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Protein Sequence Length: 1107 Download |
MGPQSSGTFP AFLTITELCP EEPIPNFRTI TESQTTKGIW LAKCAEIEPC TLVMDLEGTD 60 GRERGEDDTA FEKQSALFAL AVSDIVLINM WCHDIGREQA ANKPLLKTVF QVMLRLFSPR 120 KTTLMFVIRD KSKTPLENLE PVLREDIQKI WDSVPKPQAH ESTPLSEFFN VGNLRKRFNQ 180 SIAPGGLAGD RRGAVPASGF SFSSLAIWKV IKENKDLDLP AHKVMVATVR CEEIAHEKYT 240 EFGKNQEWCE VEEAVQTGYV QGFGKKLSSI LNLVQPAYQT MLGHIRAGTF DKFKEAFEKA 300 LNAGEGFSLA STTCAQSFMS QFDEACTDAV IHQANWDASK VKDKLRRDID SHIATVRAAK 360 LAELTSSFET KLNHALAAPV EALLDGANHE TWSSIRKLLK RESDSALSEM THDLKGFDMD 420 EKAKEEMLAN LENHAKSVVE SKAKEEAARV LIRMKDRNPF YLAVIFVGFL LAKALWVQMD 480 VAGEFRHGAH QHQISASQVV KTEDEHQKQA LLPLILHPPP LFLPSSTPLC RYVSMVKLCV 540 FPLAATGFYK YKYPFIRKVS TFQPNTLYDY IIVGGGTAGC PLAATLSQNF TVLLLERGGV 600 PFANPNVTFL KNFHITLADT SPTSASQFFV SNDGVLNSRA RVLGGGTSIN AGFYTRASQR 660 FIEKVGWDTR LVNQSYPWVE QQIVHKPQVA QWQLAVRDSL LDLGISPDNG FTYDHISGTK 720 FGGTIFDRFG RRHTSAELLA TANSQALTVL VHATVQKVLF DTNAPNSTTS PRAVGVEFKD 780 ETGKYHRALL RDDDGTKSEV ILSCGAIGTP QMLLLSGIGP RNDLEKLNIS VVVENIHVGQ 840 GMADNPMNSI FVPSNEPVNQ SLIQTVGITK LGVYIEASSG FGQSNDSIQC HHGIMSAEIG 900 QISTIPPKQR TPEAIRAYIN KKKDLPYEAF KGGFILEKIA NPFSKGQLTL IDTNVDQNPS 960 VTFNYFSDPR DLQRCVEGVR LATKIVQTKR FTEMVKCDSQ TVEKILNASV HANVNLVPKQ 1020 ANDTESLEQF CKDTVISIWH YHGGCHVGKV VDSEYKVLGV DRLRVVDGST FNESPGTNPQ 1080 ATVLMMGRYM GLKILEERLG KAAAGV* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd01851 | GBP | 1.0e-33 | 26 | 171 | 164 | + Guanylate-binding protein (GBP) family (N-terminal domain). Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein (GAP) cannot approach. | ||
COG2303 | BetA | 7.0e-47 | 568 | 1098 | 579 | + Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | ||
PLN02785 | PLN02785 | 0 | 535 | 1103 | 581 | + Protein HOTHEAD | ||
pfam05879 | RHD3 | 0 | 1 | 457 | 531 | + Root hair defective 3 GTP-binding protein (RHD3). This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement. The family also contains the homologous yeast synthetic enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking. |
Gene Ontology | |
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GO Term | Description |
GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
GO:0016817 | hydrolase activity, acting on acid anhydrides |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI35951.1 | 0 | 550 | 1106 | 34 | 593 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002275841.1 | 0 | 521 | 1106 | 10 | 584 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002327436.1 | 0 | 568 | 1104 | 17 | 546 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002329018.1 | 0 | 544 | 1104 | 25 | 590 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527404.1 | 0 | 549 | 1104 | 37 | 596 | glucose-methanol-choline (gmc) oxidoreductase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3gdp_B | 0 | 543 | 1098 | 1 | 517 | B Chain B, Crystal Structure Of Plant Cell Wall Invertase In Complex With A Specific Protein Inhibitor |
PDB | 3gdp_A | 0 | 543 | 1098 | 1 | 517 | B Chain B, Crystal Structure Of Plant Cell Wall Invertase In Complex With A Specific Protein Inhibitor |
PDB | 3gdn_B | 0 | 543 | 1098 | 1 | 517 | A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde |
PDB | 3gdn_A | 0 | 543 | 1098 | 1 | 517 | A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde |
PDB | 1ju2_B | 0 | 543 | 1098 | 1 | 517 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO796743 | 533 | 569 | 1101 | 0 |
HO852522 | 382 | 720 | 1101 | 0 |
ES808127 | 413 | 664 | 1075 | 0 |
CK271873 | 321 | 568 | 888 | 0 |
DT567063 | 296 | 797 | 1092 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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