Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10016605 |
Family | CE8 |
Protein Properties | Length: 374 Molecular Weight: 41525.9 Isoelectric Point: 8.4289 |
Chromosome | Chromosome/Scaffold: 915 Start: 192825 End: 195026 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 74 | 367 | 0 |
IVVDPNGGGDSITVQGAVDLVPDFNNQRVKIHIRPGVYREKVVVPVTKAYISLIGNASDVTTTVITWHNKASDLDSNGNELGTFRSASVTVSSDYFCATG ITFQNSAVAVAGGHGMQAVALRVSGDKAFFYRVKIVGSQDTLLDDTGSHYYYQSHILGSIDFIFGRGRSLFQDCVVESKAERYGAIAAHHRDSGNEETGF SFVGCLIRGTGKILLGRAWGNYSRAIYSYCQIEDMITPEGWSDWDVPDRRKTAVFGEYRCKGRGADTRGRVAWSKTNFTLEQVRPFLDLRFIDG |
Full Sequence |
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Protein Sequence Length: 374 Download |
MILRKWSAIG LVVLAWAMLF VGVSSTAQFP SPEIQNLVKN FISWEDTRLD AGYEYGGKSR 60 PSYREEYFRG SRLIVVDPNG GGDSITVQGA VDLVPDFNNQ RVKIHIRPGV YREKVVVPVT 120 KAYISLIGNA SDVTTTVITW HNKASDLDSN GNELGTFRSA SVTVSSDYFC ATGITFQNSA 180 VAVAGGHGMQ AVALRVSGDK AFFYRVKIVG SQDTLLDDTG SHYYYQSHIL GSIDFIFGRG 240 RSLFQDCVVE SKAERYGAIA AHHRDSGNEE TGFSFVGCLI RGTGKILLGR AWGNYSRAIY 300 SYCQIEDMIT PEGWSDWDVP DRRKTAVFGE YRCKGRGADT RGRVAWSKTN FTLEQVRPFL 360 DLRFIDGHQW LRL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02665 | PLN02665 | 2.0e-93 | 72 | 371 | 303 | + pectinesterase family protein | ||
PLN02432 | PLN02432 | 1.0e-93 | 73 | 372 | 300 | + putative pectinesterase | ||
PLN02634 | PLN02634 | 5.0e-108 | 70 | 371 | 304 | + probable pectinesterase | ||
PLN02682 | PLN02682 | 2.0e-117 | 4 | 373 | 377 | + pectinesterase family protein | ||
PLN02671 | PLN02671 | 0 | 36 | 373 | 338 | + pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EEE67559.1 | 0 | 41 | 373 | 33 | 398 | hypothetical protein OsJ_25062 [Oryza sativa Japonica Group] |
RefSeq | NP_200370.1 | 0 | 11 | 373 | 11 | 380 | QRT1 (QUARTET 1); pectinesterase [Arabidopsis thaliana] |
RefSeq | XP_002264297.1 | 0 | 71 | 373 | 58 | 359 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002298857.1 | 0 | 68 | 373 | 14 | 318 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002522727.1 | 0 | 7 | 373 | 27 | 383 | Pectinesterase U1 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 9.94922e-44 | 74 | 372 | 9 | 309 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 3e-38 | 75 | 372 | 6 | 305 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1qjv_B | 0.0000000000002 | 104 | 252 | 37 | 193 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 0.0000000000002 | 104 | 252 | 37 | 193 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 2ntq_B | 0.0000000000002 | 104 | 252 | 37 | 193 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |