y
Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10016678 |
Family | CE8 |
Protein Properties | Length: 346 Molecular Weight: 39076.2 Isoelectric Point: 9.2523 |
Chromosome | Chromosome/Scaffold: 915 Start: 602747 End: 603947 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 55 | 330 | 0 |
LVVDQSGHGDFTTVQSAIDSVPSNNRYWICIQLKAGIYREKVTIPVDKPYIILKGEGRRYTSIVWDDHSSTSQSPTFTSIADNIIVKRISFVNSYNYPVN KNRKMPAVAARVKGDKTSFYGCGFVGVQDTLWDSEGRHYFKRCSIEGAVDFIFGGGQSIYEDCEIRVNGRGYITAQGRESPEDTGGFVFKGCTVTGIGVG PMMTFLGRAWRKYARVLFYKSNLTDVVDPKGWDSWNVSPYQVTYAEYGNYGAGADTSRRVKWLKWLPIETWEEMTS |
Full Sequence |
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Protein Sequence Length: 346 Download |
MGVTQVMNSA SFQLWLRVTI FTLLFGISQS RPISLSRPPI SPYPSTLSQR HYWTLVVDQS 60 GHGDFTTVQS AIDSVPSNNR YWICIQLKAG IYREKVTIPV DKPYIILKGE GRRYTSIVWD 120 DHSSTSQSPT FTSIADNIIV KRISFVNSYN YPVNKNRKMP AVAARVKGDK TSFYGCGFVG 180 VQDTLWDSEG RHYFKRCSIE GAVDFIFGGG QSIYEDCEIR VNGRGYITAQ GRESPEDTGG 240 FVFKGCTVTG IGVGPMMTFL GRAWRKYARV LFYKSNLTDV VDPKGWDSWN VSPYQVTYAE 300 YGNYGAGADT SRRVKWLKWL PIETWEEMTS ISYVSDNGWL QRQPY* 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02634 | PLN02634 | 5.0e-78 | 55 | 340 | 301 | + probable pectinesterase | ||
PLN02432 | PLN02432 | 1.0e-84 | 55 | 341 | 291 | + putative pectinesterase | ||
PLN02480 | PLN02480 | 1.0e-85 | 54 | 340 | 296 | + Probable pectinesterase | ||
PLN02176 | PLN02176 | 1.0e-104 | 54 | 344 | 302 | + putative pectinesterase | ||
PLN02497 | PLN02497 | 2.0e-161 | 51 | 344 | 305 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI40838.1 | 0 | 27 | 344 | 32 | 341 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_197400.1 | 0 | 53 | 344 | 27 | 327 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002263748.1 | 0 | 52 | 344 | 29 | 328 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002323773.1 | 0 | 55 | 344 | 1 | 288 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002518106.1 | 0 | 15 | 344 | 7 | 335 | Pectinesterase U1 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 55 | 345 | 9 | 313 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 7e-36 | 56 | 316 | 6 | 277 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 1e-19 | 53 | 265 | 31 | 270 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 3e-19 | 52 | 317 | 4 | 320 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 3e-19 | 52 | 317 | 4 | 320 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |