Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10016711 |
Family | CE8 |
Protein Properties | Length: 368 Molecular Weight: 40055.6 Isoelectric Point: 7.085 |
Chromosome | Chromosome/Scaffold: 903 Start: 164704 End: 165887 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 73 | 356 | 0 |
IKVRPDGSGQFTTLTDAINSIPSGNTRRVIIDLGSGLYTEKVMIERSRPFITLIGDPKAMPILQFGGTAREFGTVYSATLQIEADYFVATNIIFKNTAPK PDGTKKGEQALALRIGGHMATFYNCKFHGFQDTLCDDRGWHFFKDCYIEGTVDYIFGSGTSLYLTTELKVLQDGSFVTAQARNEPDSTGYSFVHCDITGA VQKSFLGRAWSKMPKTAFLYCNIGSVICPSGWSDNNKPERDATLDFLEYKNTGPAGIATDRAKFSKQLSDAEAQHYLSLGFIQG |
Full Sequence |
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Protein Sequence Length: 368 Download |
MVIRGGDHLV FITVVLTLLA AGVNKISADD LTPIPADKAQ VEAWFKANVK PLAERKTTLN 60 ATLLAAEANA TTIKVRPDGS GQFTTLTDAI NSIPSGNTRR VIIDLGSGLY TEKVMIERSR 120 PFITLIGDPK AMPILQFGGT AREFGTVYSA TLQIEADYFV ATNIIFKNTA PKPDGTKKGE 180 QALALRIGGH MATFYNCKFH GFQDTLCDDR GWHFFKDCYI EGTVDYIFGS GTSLYLTTEL 240 KVLQDGSFVT AQARNEPDST GYSFVHCDIT GAVQKSFLGR AWSKMPKTAF LYCNIGSVIC 300 PSGWSDNNKP ERDATLDFLE YKNTGPAGIA TDRAKFSKQL SDAEAQHYLS LGFIQGSSWL 360 LPPPAYV* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02773 | PLN02773 | 6.0e-70 | 73 | 361 | 306 | + pectinesterase | ||
PLN02671 | PLN02671 | 3.0e-73 | 73 | 360 | 299 | + pectinesterase | ||
PLN02304 | PLN02304 | 8.0e-74 | 75 | 362 | 299 | + probable pectinesterase | ||
PLN02682 | PLN02682 | 7.0e-89 | 79 | 362 | 293 | + pectinesterase family protein | ||
PLN02665 | PLN02665 | 0 | 8 | 366 | 366 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002318197.1 | 0 | 12 | 364 | 7 | 363 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002333446.1 | 0 | 6 | 364 | 2 | 364 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002511042.1 | 0 | 30 | 364 | 29 | 364 | Pectinesterase-1 precursor, putative [Ricinus communis] |
RefSeq | XP_002511043.1 | 0 | 8 | 364 | 4 | 364 | Pectinesterase-1 precursor, putative [Ricinus communis] |
RefSeq | XP_002511045.1 | 0 | 5 | 365 | 9 | 366 | Pectinesterase-1 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 2e-39 | 73 | 360 | 9 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 1e-35 | 75 | 360 | 7 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1qjv_B | 2e-19 | 65 | 348 | 1 | 328 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 2e-19 | 65 | 348 | 1 | 328 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 2ntq_B | 6e-19 | 65 | 348 | 1 | 328 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |