Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10016823 |
Family | GH28 |
Protein Properties | Length: 246 Molecular Weight: 26425.3 Isoelectric Point: 8.9277 |
Chromosome | Chromosome/Scaffold: 153 Start: 39760 End: 41101 |
Description | polygalacturonase 4 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 1 | 233 | 0 |
MKFMKVKNTIIKQITSVNPMGFHIGIVLSHNVRAKHVHLIAPEDSPNTDGFHISQSSLVRVTRSTIETGDDCVGIIHGCTDVAIKKVFCGPGHGISIGSL GKYSDEKDVVGVTVKNCTLRKTDNGVRIKTYAGSPPSQASRMVFEDIVMEDVKHPIIIDQHYGSSSKGPSQVKISDIQFNNIRGTTISDVGILLDCSEKV PCEGVRFSNVDLKYSGTSKTKPFVTSCANAKAS |
Full Sequence |
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Protein Sequence Length: 246 Download |
MKFMKVKNTI IKQITSVNPM GFHIGIVLSH NVRAKHVHLI APEDSPNTDG FHISQSSLVR 60 VTRSTIETGD DCVGIIHGCT DVAIKKVFCG PGHGISIGSL GKYSDEKDVV GVTVKNCTLR 120 KTDNGVRIKT YAGSPPSQAS RMVFEDIVME DVKHPIIIDQ HYGSSSKGPS QVKISDIQFN 180 NIRGTTISDV GILLDCSEKV PCEGVRFSNV DLKYSGTSKT KPFVTSCANA KASFNGLKSP 240 PPCHA* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02155 | PLN02155 | 2.0e-51 | 1 | 243 | 247 | + polygalacturonase | ||
PLN02218 | PLN02218 | 2.0e-56 | 1 | 240 | 243 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 1.0e-59 | 1 | 243 | 247 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 6.0e-67 | 1 | 233 | 236 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 5.0e-91 | 1 | 244 | 249 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002314372.1 | 0 | 1 | 244 | 168 | 410 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002314373.1 | 0 | 1 | 217 | 105 | 320 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002315493.1 | 0 | 1 | 244 | 133 | 375 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002334010.1 | 0 | 1 | 244 | 166 | 408 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002516967.1 | 0 | 1 | 244 | 171 | 412 | Exopolygalacturonase clone GBGE184 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ib4_B | 5e-19 | 47 | 219 | 157 | 328 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ib4_A | 5e-19 | 47 | 219 | 157 | 328 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ia5_A | 5e-19 | 47 | 219 | 157 | 328 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
PDB | 1nhc_F | 3e-16 | 1 | 218 | 113 | 324 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 3e-16 | 1 | 218 | 113 | 324 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
JG075520 | 246 | 1 | 246 | 0 |
JG075143 | 240 | 7 | 246 | 0 |
JG076465 | 175 | 72 | 246 | 0 |
JG074408 | 124 | 120 | 243 | 0 |
CO121523 | 241 | 1 | 236 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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