Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10016872 |
Family | GH19 |
Protein Properties | Length: 210 Molecular Weight: 22912.9 Isoelectric Point: 6.6151 |
Chromosome | Chromosome/Scaffold: 153 Start: 357121 End: 358362 |
Description | chitinase-like protein 2 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH19 | 3 | 193 | 0 |
QKELAAFLGHVGSKTSCGYGVATGGPLAWGLCYNKELSPDKVYCDDYYKLDYPCTPGASYHGRGALPLYWNYNYGKTGEALKVDLLNHPEYIENNATLAF QAAMWKWMTPDKKNKVPSAHDVFVGNWKPTKNDTLAKRVPGFGATMNVLHGEQMCGKGDDDAMNNVVSHYLYYLDLMGVGREEAGPHEVLT |
Full Sequence |
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Protein Sequence Length: 210 Download |
MGQKELAAFL GHVGSKTSCG YGVATGGPLA WGLCYNKELS PDKVYCDDYY KLDYPCTPGA 60 SYHGRGALPL YWNYNYGKTG EALKVDLLNH PEYIENNATL AFQAAMWKWM TPDKKNKVPS 120 AHDVFVGNWK PTKNDTLAKR VPGFGATMNV LHGEQMCGKG DDDAMNNVVS HYLYYLDLMG 180 VGREEAGPHE VLTCGEQLPF GKAPTATSS* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00182 | Glyco_hydro_19 | 5.0e-59 | 1 | 182 | 182 | + Chitinase class I. | ||
cd00325 | chitinase_glyco_hydro_19 | 1.0e-78 | 1 | 194 | 194 | + Glycoside hydrolase family 19 chitinase domain. Chitinases are enzymes that catalyze the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Family 19 chitinases are found primarily in plants (classes I, III, and IV), but some are found in bacteria. Class I and II chitinases are similar in their catalytic domains. Class I chitinases have an N-terminal cysteine-rich, chitin-binding domain which is separated from the catalytic domain by a proline and glycine-rich hinge region. Class II chitinases lack both the chitin-binding domain and the hinge region. Class IV chitinases are similar to class I chitinases but they are smaller in size due to certain deletions. Despite any significant sequence homology with lysozymes, structural analysis reveals that family 19 chitinases, together with family 46 chitosanases, are similar to several lysozymes including those from T4-phage and from goose. The structures reveal that the different enzyme groups arose from a common ancestor glycohydrolase antecedent to the procaryotic/eucaryotic divergence. |
Gene Ontology | |
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GO Term | Description |
GO:0004568 | chitinase activity |
GO:0006032 | chitin catabolic process |
GO:0016998 | cell wall macromolecule catabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAQ56599.1 | 0 | 4 | 209 | 111 | 315 | chitinase-like protein [Gossypium hirsutum] |
GenBank | AAQ84319.1 | 0 | 4 | 209 | 33 | 237 | fiber glycosyl hydrolase family 19 protein [Gossypium barbadense] |
GenBank | ABL86683.1 | 0 | 5 | 200 | 1 | 195 | CLT1 [Gossypium barbadense] |
RefSeq | XP_002316022.1 | 0 | 2 | 202 | 113 | 312 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002519197.1 | 0 | 1 | 209 | 116 | 323 | chitinase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3cql_B | 0 | 3 | 201 | 54 | 243 | A Chain A, Crystal Structure Of Gh Family 19 Chitinase From Carica Papaya |
PDB | 3cql_A | 0 | 3 | 201 | 54 | 243 | A Chain A, Crystal Structure Of Gh Family 19 Chitinase From Carica Papaya |
PDB | 3iwr_B | 0 | 3 | 200 | 110 | 298 | A Chain A, Crystal Structure Of Gh Family 19 Chitinase From Carica Papaya |
PDB | 3iwr_A | 0 | 3 | 200 | 110 | 298 | A Chain A, Crystal Structure Of Gh Family 19 Chitinase From Carica Papaya |
PDB | 2dkv_A | 0 | 3 | 200 | 110 | 298 | A Chain A, Crystal Structure Of Class I Chitinase From Oryza Sativa L. Japonica |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
JG219571 | 210 | 1 | 210 | 0 |
JG223188 | 210 | 1 | 210 | 0 |
JG219856 | 210 | 1 | 210 | 0 |
JG249166 | 210 | 1 | 210 | 0 |
JG224450 | 210 | 1 | 210 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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