Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10016940 |
Family | GH28 |
Protein Properties | Length: 446 Molecular Weight: 47450.4 Isoelectric Point: 6.5795 |
Chromosome | Chromosome/Scaffold: 235 Start: 372731 End: 375709 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 95 | 431 | 0 |
RGIGIPTVVIPSRSKEDAEFLVNPVVFRGPCNSHHLHFQVGAKIVAPNETEAWGNNREAWIGFVNVDGLSLNGGGSFDGRGLIWWSLCNIQRNCTRPTAL FFNNCNRLRVSKLSHLNSPRNHIGVASSSNVKISNLNISAPEDSPNTDGIDISGSSNVYVEDTFIGTGDDCIAINGFSSYITIIGVVCGPGHGISVGSLG EDGAYQTVSDVLVKDCVFNRTLNGARIKTWKGGSGYVKKIKFERITLIDSGNPIIINQDYVNNSSFGPAPGSNIQISQVSYDGVLGTSSEGRSIYFNCEQ GSSGMGCTDIFVNNVHISAGTPNVERPYAVCINAHGN |
Full Sequence |
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Protein Sequence Length: 446 Download |
MFSRYSKAVE ANYVIVTTSS LGLGLSLLLM LLLFPHSCSC SSSSPTLLGN ISRSLSSSNI 60 FNVLDYGAVG DGKTDDSQAF LKAWKDVCAA EVVGRGIGIP TVVIPSRSKE DAEFLVNPVV 120 FRGPCNSHHL HFQVGAKIVA PNETEAWGNN REAWIGFVNV DGLSLNGGGS FDGRGLIWWS 180 LCNIQRNCTR PTALFFNNCN RLRVSKLSHL NSPRNHIGVA SSSNVKISNL NISAPEDSPN 240 TDGIDISGSS NVYVEDTFIG TGDDCIAING FSSYITIIGV VCGPGHGISV GSLGEDGAYQ 300 TVSDVLVKDC VFNRTLNGAR IKTWKGGSGY VKKIKFERIT LIDSGNPIII NQDYVNNSSF 360 GPAPGSNIQI SQVSYDGVLG TSSEGRSIYF NCEQGSSGMG CTDIFVNNVH ISAGTPNVER 420 PYAVCINAHG NYNSSFPNVL CLSSL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 8.0e-77 | 47 | 429 | 389 | + polygalacturonase ADPG | ||
PLN02188 | PLN02188 | 3.0e-80 | 56 | 432 | 383 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02793 | PLN02793 | 3.0e-87 | 55 | 444 | 395 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 4.0e-101 | 55 | 443 | 394 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 1.0e-102 | 47 | 430 | 385 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAY21049.1 | 0 | 61 | 443 | 30 | 397 | PGN [Glycine max] |
GenBank | ABO81149.1 | 0 | 64 | 444 | 1 | 370 | Glycoside hydrolase, family 28 [Medicago truncatula] |
EMBL | CBI36307.1 | 0 | 62 | 442 | 33 | 402 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002324855.1 | 0 | 58 | 443 | 24 | 395 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515526.1 | 0 | 60 | 443 | 27 | 393 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 7e-26 | 163 | 414 | 72 | 321 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 7e-26 | 163 | 414 | 72 | 321 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 7e-26 | 163 | 414 | 72 | 321 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 7e-26 | 163 | 414 | 72 | 321 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 7e-26 | 163 | 414 | 72 | 321 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |