y
Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10017109 |
Family | GH28 |
Protein Properties | Length: 475 Molecular Weight: 51097.5 Isoelectric Point: 4.5203 |
Chromosome | Chromosome/Scaffold: 216 Start: 304599 End: 307853 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 106 | 429 | 0 |
ACGVESATVLAPSGFSFVITSTIFNGPCKPGLVLKIDGCLMPPDGPDAWPDGDSKQQWLVFYRLNDMTLTGEGTIEGNGDKWWDLPCKPHRGMDGTASSD GCESPTLIRFFMSSNLVVSGIRIQNSPMFHMKFDGCDGVLIEKIQISSPKLSPNTDGIHIGNTNNVGIYNSMISNGDDCVSIGTGTSNIDIEGLTCGPSH GISIGSLGVHNSKACVYNITARNLLIRESDNGVRIKTWQGGSGSVSGISFENIQMENVRNCINIDQYYCNSKSCENQTSAVYVNDISFRNIKGTYDVRTP PVHFACSDTVACTNITLSEVELLP |
Full Sequence |
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Protein Sequence Length: 475 Download |
MEIVIPRRAL LLTLVLVAMA PVVVQGRHTF HKAKKGKHIP PNSPVPSPEY NNNPPPPPPS 60 LVPSDPYPTD PPGDSDDCIF DVRSYGAVGD GSTDDTAAFR AAWKDACGVE SATVLAPSGF 120 SFVITSTIFN GPCKPGLVLK IDGCLMPPDG PDAWPDGDSK QQWLVFYRLN DMTLTGEGTI 180 EGNGDKWWDL PCKPHRGMDG TASSDGCESP TLIRFFMSSN LVVSGIRIQN SPMFHMKFDG 240 CDGVLIEKIQ ISSPKLSPNT DGIHIGNTNN VGIYNSMISN GDDCVSIGTG TSNIDIEGLT 300 CGPSHGISIG SLGVHNSKAC VYNITARNLL IRESDNGVRI KTWQGGSGSV SGISFENIQM 360 ENVRNCINID QYYCNSKSCE NQTSAVYVND ISFRNIKGTY DVRTPPVHFA CSDTVACTNI 420 TLSEVELLPH EGELLDDPFC WNAYGTQETV TIPPIDCLND GVPQNVEELS AYAC* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 1.0e-74 | 80 | 458 | 387 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 8.0e-82 | 73 | 454 | 386 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 3.0e-85 | 112 | 427 | 317 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 1.0e-89 | 82 | 427 | 349 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 1.0e-106 | 79 | 460 | 385 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAK95305.1 | 0 | 11 | 474 | 12 | 475 | AF410319_1 At1g48100/F21D18_17 [Arabidopsis thaliana] |
RefSeq | NP_175244.1 | 0 | 11 | 474 | 12 | 475 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002263668.1 | 0 | 70 | 474 | 71 | 477 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002312305.1 | 0 | 67 | 474 | 75 | 482 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002519290.1 | 0 | 1 | 474 | 1 | 479 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1rmg_A | 1e-23 | 81 | 446 | 22 | 356 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1bhe_A | 3e-23 | 176 | 373 | 115 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 9e-23 | 161 | 427 | 56 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 9e-23 | 161 | 427 | 56 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 9e-23 | 161 | 427 | 56 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |