Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10018302 |
Family | GH28 |
Protein Properties | Length: 258 Molecular Weight: 27542.9 Isoelectric Point: 6.6357 |
Chromosome | Chromosome/Scaffold: 163 Start: 458541 End: 460700 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 8 | 242 | 0 |
RPTALSFHSCNNLVLNSLHHVNSQRNHISIMGSHGVDVSHLMISAPENSPNTDGIDIATSSNLNIHDSFIGTGDDCIAINGFTSHVNVSSVMCGPGHGIS IGSLGKNGIYETVEDVHVRDCTFKGTTNGARIKTWKGGRGYVRRVSFEDIALVNAENPIIIDQEYFSENAPPSRDHVEITDVRFSRMRGTTPSEKAVDIN CVGGSGCKAIVVEGMDIKSAVDGEKLVAVCNNAHG |
Full Sequence |
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Protein Sequence Length: 258 Download |
MRNIGCDRPT ALSFHSCNNL VLNSLHHVNS QRNHISIMGS HGVDVSHLMI SAPENSPNTD 60 GIDIATSSNL NIHDSFIGTG DDCIAINGFT SHVNVSSVMC GPGHGISIGS LGKNGIYETV 120 EDVHVRDCTF KGTTNGARIK TWKGGRGYVR RVSFEDIALV NAENPIIIDQ EYFSENAPPS 180 RDHVEITDVR FSRMRGTTPS EKAVDINCVG GSGCKAIVVE GMDIKSAVDG EKLVAVCNNA 240 HGISRDNSSP KVSCLRP* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 2.0e-57 | 9 | 250 | 244 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 3.0e-58 | 34 | 240 | 213 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 1.0e-58 | 3 | 241 | 242 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03003 | PLN03003 | 4.0e-67 | 8 | 255 | 254 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 2.0e-70 | 32 | 247 | 218 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI36307.1 | 0 | 11 | 256 | 158 | 403 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002266543.1 | 0 | 5 | 256 | 124 | 375 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002324855.1 | 0 | 1 | 255 | 140 | 394 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002332134.1 | 0 | 11 | 255 | 118 | 360 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002530440.1 | 0 | 52 | 255 | 3 | 206 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 3e-20 | 1 | 187 | 143 | 329 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ib4_B | 1e-17 | 3 | 212 | 98 | 310 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ib4_A | 1e-17 | 3 | 212 | 98 | 310 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ia5_A | 1e-17 | 3 | 212 | 98 | 310 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
PDB | 2iq7_G | 2e-16 | 3 | 239 | 94 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EY474520 | 255 | 3 | 255 | 0 |
GT141262 | 224 | 32 | 255 | 0 |
GO013888 | 223 | 32 | 254 | 0 |
CV536748 | 206 | 3 | 208 | 0 |
GO025017 | 207 | 50 | 255 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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