Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10018429 |
Family | PL1 |
Protein Properties | Length: 468 Molecular Weight: 52385.7 Isoelectric Point: 8.7082 |
Chromosome | Chromosome/Scaffold: 251 Start: 398161 End: 400849 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 86 | 288 | 0 |
SLWIVFAKDMVITLKKELVVNSYKTIEGRGAKLDIAYGQCITIQDVTHVIVHGISIHHCEPVTPGLVRNSPSHVGRRLGSDGDAIAIFASSNVWIDHCYL ARCADGLIDIIHASTSITISNNYFTQHDKVMLIGHNDNNKEDKVMKITIAFNHFGVGCIERMPRVRFGYAHVVNNRYDEWHMYAIGGSANPTIFSQGNYF IAP |
Full Sequence |
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Protein Sequence Length: 468 Download |
MGLFSIVLLT VSFRLLLTHD LHANVVASLD YYSYKPGSLA DCMVGLGQTT IGGKYGSIYV 60 VKTGGDDDPA DPKPGTFRYG AFQAKSLWIV FAKDMVITLK KELVVNSYKT IEGRGAKLDI 120 AYGQCITIQD VTHVIVHGIS IHHCEPVTPG LVRNSPSHVG RRLGSDGDAI AIFASSNVWI 180 DHCYLARCAD GLIDIIHAST SITISNNYFT QHDKVMLIGH NDNNKEDKVM KITIAFNHFG 240 VGCIERMPRV RFGYAHVVNN RYDEWHMYAI GGSANPTIFS QGNYFIAPNK PSPKQINVLN 300 FDQVTKREVK SGWKQWKWRW SGNVFENGAY FIDQLYLEFD YMAFSNPGSA IECEGAWSTN 360 LTTMNRAPKV ESNVHYELVR SSSNMYSAWQ NELHGRLGHY KSGVEGDRDM EIGLNQGRNA 420 AKVVIAFPTP RVERTVNCES QGLAIGKDMG CQWRRRKWLP AWRGLQR* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 2.0e-32 | 4 | 285 | 295 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 6.0e-62 | 100 | 285 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 1.0e-77 | 94 | 289 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI23207.1 | 0 | 38 | 332 | 20 | 305 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_172656.1 | 0 | 31 | 336 | 48 | 345 | pectate lyase family protein [Arabidopsis thaliana] |
Swiss-Prot | O65388 | 0 | 31 | 336 | 48 | 351 | PEL2_ARATH RecName: Full=Putative pectate lyase 2; Flags: Precursor |
RefSeq | XP_002263615.1 | 0 | 38 | 334 | 69 | 356 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002518442.1 | 0 | 38 | 336 | 62 | 351 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 39 | 352 | 21 | 330 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 39 | 352 | 21 | 330 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 2e-20 | 46 | 287 | 17 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 8e-16 | 165 | 285 | 187 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pcl_A | 0.000000000000004 | 100 | 292 | 73 | 283 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |