y
Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10018430 |
Family | PL1 |
Protein Properties | Length: 408 Molecular Weight: 45049.3 Isoelectric Point: 9.3138 |
Chromosome | Chromosome/Scaffold: 251 Start: 401234 End: 402769 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 129 | 327 | 0 |
IVFEKDMVITLKNELMVNSYKTIDGRGARVEIAYGPCITIQGVSHVIVHGISIHHCKPGKPGPVRISPSHVGRRLGSDGDAIAIFGSSNVWIDHCYLARS ADGLIDIIHASTYITISNNYFTQHDKVMLIGHNDTYKEDKVMKITIAFNHFGVGCIERMPRVRFGYAHVVNNRYDEWQMYAIGGSANPTILSEGNYFIA |
Full Sequence |
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Protein Sequence Length: 408 Download |
MGFSSSIFLL TISFHLLLTH DPTTNVVGAF ALDYYNYKPR LKGHSNHRLY ADATSKLLLN 60 PIDSCWRRSR SWATERRSLA NCTVGFGEAT EGGKNGSIYV VKTGGDEDPA NPKPGTLRYG 120 AIQTKPLWIV FEKDMVITLK NELMVNSYKT IDGRGARVEI AYGPCITIQG VSHVIVHGIS 180 IHHCKPGKPG PVRISPSHVG RRLGSDGDAI AIFGSSNVWI DHCYLARSAD GLIDIIHAST 240 YITISNNYFT QHDKVMLIGH NDTYKEDKVM KITIAFNHFG VGCIERMPRV RFGYAHVVNN 300 RYDEWQMYAI GGSANPTILS EGNYFIAPDN PSAKQVTKRQ ARGGWKQWKW RSSGDVFENG 360 AYFVESGRGQ CIPPYTRSQS FKVADGAMTP ALTYAAGPLS CSWGKPC* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 1.0e-29 | 81 | 367 | 311 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 1.0e-62 | 140 | 325 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 4.0e-75 | 134 | 329 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_172656.1 | 0 | 56 | 407 | 33 | 384 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | XP_002263615.1 | 0 | 58 | 407 | 49 | 397 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002317128.1 | 0 | 29 | 407 | 23 | 382 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331545.1 | 0 | 15 | 407 | 6 | 392 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002518442.1 | 0 | 50 | 407 | 34 | 390 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 60 | 400 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 60 | 400 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 7e-21 | 78 | 327 | 1 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pcl_A | 6e-18 | 140 | 325 | 73 | 276 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
PDB | 1vbl_A | 5e-17 | 140 | 325 | 123 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |