Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10019231 |
Family | PL4 |
Protein Properties | Length: 721 Molecular Weight: 82581.4 Isoelectric Point: 9.4894 |
Chromosome | Chromosome/Scaffold: 377 Start: 75599 End: 78987 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 71 | 699 | 0 |
REKDPQRVIIDNGIVRVTFASPEGHIIGVRYNGISNVLESDNDYDNRGYWDVVWNKPGAKNDFDKLAASRFRLVMQDDDQIEVSFSKKWKPEDYSDTVPL NVDKRYILRKGSSGIYMYTILERLDGWPDVDMDQIRVVFKLQDKLFRYMAISDERQRVMPTVKDRESGRALDYPEAVLLTRPRNPAMRGEVDDKYQYSCE DQDNKVHGWISEDRRVGFWMITPSDEFRVGGPVKQDLTSHVGPTVLNMFTSTHYAGKDMNTEYRNGEPWKKVLGPVFVYLNAGRTSKLWRDAKRRMRREV KSWPYHFVNSEDVPSADQRGTVVGQLLHRDRYTNENRLTYAGSAYVGLAMPGEEGSWETDAKGYQFWTRADEQGKFSIDNIRAGTYSFYGWVPGIIGENK YKANITIRPGRFLLQQPLLRKTFTVFSPNDQYNSGSKIDLGMLVYNPPRNGPTLWEIGIPDRKAAEFYVPDAYPTLMNRLYANRPTERFRQYGLWARYTD KYPKHDLVYEVGVSNFFEDWFYAHVPRRVGNNTYRATTWQIKFGLPKPDRSGDYTLQLALASAANAEIQVRFNDWNTSGKPLFTTGLIGKDNAIARHGIH GLYWLFSISVPCSRVVDGKNSVYLTQTRT |
Full Sequence |
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Protein Sequence Length: 721 Download |
MVMKSSSAKI ALLSWGFFLF STVCFAAVDS ASAAVAGVGM KASSRFIVIL SPTMENRVTN 60 SSSGLAVQLD REKDPQRVII DNGIVRVTFA SPEGHIIGVR YNGISNVLES DNDYDNRGYW 120 DVVWNKPGAK NDFDKLAASR FRLVMQDDDQ IEVSFSKKWK PEDYSDTVPL NVDKRYILRK 180 GSSGIYMYTI LERLDGWPDV DMDQIRVVFK LQDKLFRYMA ISDERQRVMP TVKDRESGRA 240 LDYPEAVLLT RPRNPAMRGE VDDKYQYSCE DQDNKVHGWI SEDRRVGFWM ITPSDEFRVG 300 GPVKQDLTSH VGPTVLNMFT STHYAGKDMN TEYRNGEPWK KVLGPVFVYL NAGRTSKLWR 360 DAKRRMRREV KSWPYHFVNS EDVPSADQRG TVVGQLLHRD RYTNENRLTY AGSAYVGLAM 420 PGEEGSWETD AKGYQFWTRA DEQGKFSIDN IRAGTYSFYG WVPGIIGENK YKANITIRPG 480 RFLLQQPLLR KTFTVFSPND QYNSGSKIDL GMLVYNPPRN GPTLWEIGIP DRKAAEFYVP 540 DAYPTLMNRL YANRPTERFR QYGLWARYTD KYPKHDLVYE VGVSNFFEDW FYAHVPRRVG 600 NNTYRATTWQ IKFGLPKPDR SGDYTLQLAL ASAANAEIQV RFNDWNTSGK PLFTTGLIGK 660 DNAIARHGIH GLYWLFSISV PCSRVVDGKN SVYLTQTRTD RPFNGVMYDY IRLEGPKWKF 720 * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam09284 | RhgB_N | 0.005 | 176 | 310 | 135 | + Rhamnogalacturonase B, N-terminal. Members of this family are found in prokaryotic Rhamnogalacturonase B, and adopt a structure consisting of a beta supersandwich, with eighteen strands in two beta-sheets. The exact function of the domain is unknown, but a putative role includes carbohydrate-binding. | ||
cd10316 | RGL4_M | 4.0e-26 | 388 | 481 | 94 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 5.0e-47 | 525 | 714 | 192 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 1.0e-73 | 77 | 353 | 278 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 4.0e-77 | 47 | 261 | 217 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_179847.1 | 0 | 64 | 716 | 49 | 674 | lyase [Arabidopsis thaliana] |
RefSeq | XP_002308510.1 | 0 | 59 | 717 | 39 | 672 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002319997.1 | 0 | 78 | 716 | 1 | 617 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527229.1 | 0 | 61 | 716 | 37 | 667 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527245.1 | 0 | 78 | 716 | 2 | 618 | lyase, putative [Ricinus communis] |