Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10019711 |
Family | GH28 |
Protein Properties | Length: 453 Molecular Weight: 49740.7 Isoelectric Point: 10.0654 |
Chromosome | Chromosome/Scaffold: 420 Start: 459947 End: 462785 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 102 | 437 | 0 |
KAACNSSRGTTQFVVPKNKIYVLKPIVFVGPCRADLTVKIFGTIKASNKVEDYKKDRTRWISFERLKNLRVKGGGTINGNGKIWWQNSCKVNTTLPCTLA PNAVTFEECTNLKVTKLRFENAQQMHLSFNNCTNVRASHLLVNAPWNSPNTDGVHVTHTRNIHITRSLIKTGDDCISIVSGSKNVKVTDITCGPGHGISI GSLGAGNATAEVSDVLVNRATISGTSNGVRIKTWQGGSGYARNIKFQHIVMKNVSNPIIINQNYCDQDEPCQPQASAVKVSNVVYKNIRGTSATKLAIKF ECSESVPCEEIVMQDVSLMESQEEAEDAAKAECVSV |
Full Sequence |
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Protein Sequence Length: 453 Download |
MHPKNPPRLW LPFFFFLAFF SSSFGSYPQQ TNPSILPSQN LGGFEGRVSI NSKAKSSKRR 60 PSPHHHHHHH HQVRVKIVNV DKFGAKGDGR SDDTRAFGKA WKAACNSSRG TTQFVVPKNK 120 IYVLKPIVFV GPCRADLTVK IFGTIKASNK VEDYKKDRTR WISFERLKNL RVKGGGTING 180 NGKIWWQNSC KVNTTLPCTL APNAVTFEEC TNLKVTKLRF ENAQQMHLSF NNCTNVRASH 240 LLVNAPWNSP NTDGVHVTHT RNIHITRSLI KTGDDCISIV SGSKNVKVTD ITCGPGHGIS 300 IGSLGAGNAT AEVSDVLVNR ATISGTSNGV RIKTWQGGSG YARNIKFQHI VMKNVSNPII 360 INQNYCDQDE PCQPQASAVK VSNVVYKNIR GTSATKLAIK FECSESVPCE EIVMQDVSLM 420 ESQEEAEDAA KAECVSVDLT RKGIVTPLCS PT* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 4.0e-89 | 76 | 438 | 366 | + polygalacturonase | ||
PLN02188 | PLN02188 | 2.0e-90 | 77 | 437 | 366 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 2.0e-104 | 107 | 419 | 313 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 2.0e-131 | 78 | 450 | 375 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 7.0e-134 | 76 | 422 | 348 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAC26512.1 | 0 | 4 | 449 | 8 | 458 | polygalacturonase precursor [Cucumis melo] |
GenBank | AAF71160.1 | 0 | 76 | 449 | 88 | 455 | AF152758_1 polygalacturonase A [Actinidia chinensis] |
Swiss-Prot | P35336 | 0 | 76 | 449 | 88 | 455 | PGLR_ACTDE RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor |
RefSeq | XP_002313308.1 | 0 | 76 | 450 | 7 | 376 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002517823.1 | 0 | 1 | 449 | 1 | 446 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-22 | 161 | 419 | 102 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 6e-17 | 154 | 399 | 55 | 301 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 6e-17 | 154 | 399 | 55 | 301 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 6e-17 | 154 | 399 | 55 | 301 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 6e-17 | 154 | 399 | 55 | 301 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |