| Basic Information | |
|---|---|
| Species | Linum usitatissimum |
| Cazyme ID | Lus10020044 |
| Family | CBM53 |
| Protein Properties | Length: 1099 Molecular Weight: 125327 Isoelectric Point: 6.6347 |
| Chromosome | Chromosome/Scaffold: 23 Start: 556106 End: 562220 |
| Description | starch synthase 3 |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CBM53 | 401 | 490 | 1.5e-30 |
| RVRLFYNKSSGPLAHSNDLWIHGGHDNWNDGLSIVQKFAKFERKKDGDWWYTNVVVPDGALVLDWVFADGPPQSAAVYDNNRLQDFHAIV | |||
| CBM53 | 225 | 308 | 1.3e-30 |
| QEVEVFLNRRLSSLENESEILVMGAFNDWKWKSFTARLSKTHLREDWWSCRIQIPKEAYKIDFVFFNGRNVYDNNGRKDYCVPV | |||
| CBM53 | 562 | 650 | 4e-33 |
| GSDVTVFYNPANTVLNGKSEVWFRGSFNRWTHRKGPLPPQKMLLADDGLHVKATVRVPLDAYMMDFVFSDKEDGGTFDNRDRMDYHVPV | |||
| GT5 | 661 | 1094 | 0 |
| NIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVNIILPKYDCLKLNHVKDLQFHRSYSWGGTEIKVWLGKVESVSVYFLEPQNGMFWTGCIYGCRND GERFGFFCHAALEFLLQSGSHPDIIHCHDWSSAPVAWLFKDHYVHYGLSKARIVFTIHNLEFGAQNISKAMAYSDKATTVSPTYATEVAGNGAVAPHLYK FHGILNGIDQDIWDPYNDQFIPVDYTSENVIEGKRAAKEALQERLVLKRANLPLVGIITRLTHQKGIHLIKHAIWRTLERGGQVVLLGSAPDPRIQNDFV GLANQLHSTHGDRARLCLTYDEPLSHLIYAGSDFMLVPSIFEPCGLTQLTAMRYGLFDTVFDVDDDKERAQSQGIEPNGFNFEGADASGVDYALNRAISA WYDGRDWFNALCKTVMEQDWSWNKPALDYMELYH | |||
| Full Sequence |
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| Protein Sequence Length: 1099 Download |
| MEVSLQVQRS LTSCRRASSH DKPRFKITPF SGSGSFSPLR TTTHFISLAA WCTSSGFSLQ 60 VTASSDFSGR KGKKLSHGRP KTSAPKGFVP KTSSVPRREP KQYGSKNDAD DRSPDNHVES 120 VKTMQDESKT TRKVTVTETS LSVKNGSVGS NESTETSLGG THFDDLVEEE EEDSRIDKAK 180 EEAFLALKLE SEENLRRQEI EVLAEKSFSK GEKMFVYPQI VNPDQEVEVF LNRRLSSLEN 240 ESEILVMGAF NDWKWKSFTA RLSKTHLRED WWSCRIQIPK EAYKIDFVFF NGRNVYDNNG 300 RKDYCVPVEG GMDEFAFEDF LLEEKQRELK RLAEENAEKE RQAEEQRRME ADMAAREADR 360 LQAKTETEKR RELLQKVMQK AVRSVENVWF IEPREFKGLD RVRLFYNKSS GPLAHSNDLW 420 IHGGHDNWND GLSIVQKFAK FERKKDGDWW YTNVVVPDGA LVLDWVFADG PPQSAAVYDN 480 NRLQDFHAIV PNNIPEDVYW VEEEHKLYRK LQEERRGREE ALRAKAEKTR RIKAETKERT 540 LRRFLLSQKH IFYTEPLDVQ AGSDVTVFYN PANTVLNGKS EVWFRGSFNR WTHRKGPLPP 600 QKMLLADDGL HVKATVRVPL DAYMMDFVFS DKEDGGTFDN RDRMDYHVPV LGGIAKESPM 660 NIVHIAVEMA PIAKVGGLGD VVTSLSRAVQ DLNHNVNIIL PKYDCLKLNH VKDLQFHRSY 720 SWGGTEIKVW LGKVESVSVY FLEPQNGMFW TGCIYGCRND GERFGFFCHA ALEFLLQSGS 780 HPDIIHCHDW SSAPVAWLFK DHYVHYGLSK ARIVFTIHNL EFGAQNISKA MAYSDKATTV 840 SPTYATEVAG NGAVAPHLYK FHGILNGIDQ DIWDPYNDQF IPVDYTSENV IEGKRAAKEA 900 LQERLVLKRA NLPLVGIITR LTHQKGIHLI KHAIWRTLER GGQVVLLGSA PDPRIQNDFV 960 GLANQLHSTH GDRARLCLTY DEPLSHLIYA GSDFMLVPSI FEPCGLTQLT AMRYGLFDTV 1020 FDVDDDKERA QSQGIEPNGF NFEGADASGV DYALNRAISA WYDGRDWFNA LCKTVMEQDW 1080 SWNKPALDYM ELYHSARK* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02939 | PLN02939 | 5.0e-141 | 656 | 1096 | 497 | + transferase, transferring glycosyl groups | ||
| TIGR02095 | glgA | 3.0e-145 | 660 | 1096 | 489 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
| PRK00654 | glgA | 2.0e-152 | 660 | 1098 | 486 | + glycogen synthase; Provisional | ||
| cd03791 | GT1_Glycogen_synthase_DULL1_like | 2.0e-164 | 661 | 1095 | 490 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
| PLN02316 | PLN02316 | 0 | 75 | 1098 | 1039 | + synthase/transferase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:2001070 | starch binding |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAB40374.1 | 0 | 149 | 1098 | 187 | 1145 | Starch synthase isoform SS III [Vigna unguiculata] |
| RefSeq | XP_002269011.1 | 0 | 1 | 1098 | 1 | 1140 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002305571.1 | 0 | 75 | 1098 | 1 | 1017 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002518476.1 | 0 | 75 | 1098 | 1 | 1058 | starch synthase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3d1j_A | 0 | 660 | 1094 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 3guh_A | 0 | 660 | 1094 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4u_A | 0 | 660 | 1094 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4t_A | 0 | 660 | 1094 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2qzs_A | 0 | 660 | 1094 | 1 | 474 | A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With Adp And Glucose(Wtgsb) |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| HO778003 | 727 | 169 | 895 | 0 |
| HO794758 | 571 | 539 | 1098 | 0 |
| HO651392 | 412 | 698 | 1099 | 0 |
| CK247929 | 321 | 646 | 966 | 0 |
| HO794758 | 114 | 205 | 312 | 0.012 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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