| Basic Information | |
|---|---|
| Species | Linum usitatissimum |
| Cazyme ID | Lus10020985 |
| Family | CBM22 |
| Protein Properties | Length: 566 Molecular Weight: 63033.6 Isoelectric Point: 7.9605 |
| Chromosome | Chromosome/Scaffold: 3 Start: 726309 End: 728476 |
| Description | Glycosyl hydrolase family 10 protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CBM22 | 24 | 142 | 6e-22 |
| IIVNPDLNNGLQGWSRLGNPQLEHRSVSETSNNSFIVAHSRTQPNDSVSQKVYLRKDRLYSFSAWIQVSGKENVAVTAGFKTSNGVSIAAGAVVAEPGCW SMLKGGLTVSTSGIAYLYF | |||
| GH10 | 202 | 471 | 0 |
| QQNANSFPFGCAINKNILTNGAYQNWFTSRGFSVTAFENEMKWYSTEYSRGREDYSTADAMLQFAKKHNVAVRGHNVVWDDPRYQPGWLSSLPPREFGSA VRTRINSVVSRYKGQVIAWDVVNENLHFSFLESKLGKYASSLVYNLAYKADGGSTPLFLNEYNTIEERRDPDSTPARYLQKLREIRKFNDNYKINFGIGA ESHFEGNPNIPYMRASIDTLAAAKLPIWLTEIDFQGSSSTQAGYLEQVLREGHAHPAVQGIVVWGAWAPQ | |||
| Full Sequence |
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| Protein Sequence Length: 566 Download |
| MSMDRTLIHS CLEVPHKPQY KGGIIVNPDL NNGLQGWSRL GNPQLEHRSV SETSNNSFIV 60 AHSRTQPNDS VSQKVYLRKD RLYSFSAWIQ VSGKENVAVT AGFKTSNGVS IAAGAVVAEP 120 GCWSMLKGGL TVSTSGIAYL YFRSRNSAVD VWIDSVSLQP FTHQEWKNHQ DQSIEQVRKR 180 KVKIQVVDTQ GNPLPNATVS VQQNANSFPF GCAINKNILT NGAYQNWFTS RGFSVTAFEN 240 EMKWYSTEYS RGREDYSTAD AMLQFAKKHN VAVRGHNVVW DDPRYQPGWL SSLPPREFGS 300 AVRTRINSVV SRYKGQVIAW DVVNENLHFS FLESKLGKYA SSLVYNLAYK ADGGSTPLFL 360 NEYNTIEERR DPDSTPARYL QKLREIRKFN DNYKINFGIG AESHFEGNPN IPYMRASIDT 420 LAAAKLPIWL TEIDFQGSSS TQAGYLEQVL REGHAHPAVQ GIVVWGAWAP QGCYRMCLTD 480 NNFRNLPTGD VVDKLLHEWG HRTAGPSSSS SYVVGETDEN GYMETSLFLG DYNLSITAGD 540 SSVAAERLLV HSTTNQPLLL LQATT* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02018 | CBM_4_9 | 0.002 | 22 | 142 | 127 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| COG3693 | XynA | 8.0e-38 | 231 | 466 | 256 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| pfam00331 | Glyco_hydro_10 | 1.0e-50 | 205 | 466 | 279 | + Glycosyl hydrolase family 10. | ||
| smart00633 | Glyco_10 | 3.0e-73 | 242 | 492 | 276 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAN10199.1 | 0 | 1 | 536 | 30 | 548 | endoxylanase [Carica papaya] |
| RefSeq | XP_002264556.1 | 0 | 1 | 537 | 110 | 625 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002264605.1 | 0 | 1 | 537 | 25 | 541 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002313180.1 | 0 | 11 | 536 | 3 | 510 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002532418.1 | 0 | 1 | 560 | 21 | 564 | Endo-1,4-beta-xylanase C precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nq6_A | 7e-28 | 210 | 492 | 15 | 298 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1xas_A | 4e-24 | 210 | 466 | 16 | 267 | A Chain A, Crystal Structure, At 2.6 Angstroms Resolution, Of The Streptomyces Lividans Xylanase A, A Member Of The F Family Of Beta-1,4-D-Glycanses |
| PDB | 1e0v_A | 3e-23 | 210 | 466 | 16 | 267 | A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme Intermediate At 1.7 A |
| PDB | 1v0n_A | 3e-23 | 210 | 466 | 16 | 267 | A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme Intermediate At 1.7 A |
| PDB | 1v0m_A | 3e-23 | 210 | 466 | 16 | 267 | A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme Intermediate At 1.7 A |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| EX266128 | 279 | 223 | 500 | 0 |
| GR150167 | 268 | 15 | 282 | 0 |
| AM722845 | 251 | 188 | 438 | 0 |
| GR160803 | 258 | 56 | 313 | 0 |
| GR186303 | 258 | 251 | 508 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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