Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10022530 |
Family | GH28 |
Protein Properties | Length: 405 Molecular Weight: 43815 Isoelectric Point: 10.7318 |
Chromosome | Chromosome/Scaffold: 465 Start: 282772 End: 284309 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 64 | 391 | 0 |
NRACGSRQRPILYVPRGRYLTRTMTFNGPCKNRNIFFKIDGTLVAPSNFWTIGNNANWIGFRHVNGVTISGGLLDARGKALWACKKSGWHCPSGATTLEI SNSRNVVVSRLTSVNSQMFNIVVNYGQNVKFQGVRVYNPGNSPNTDGIHVQFSTGVSIVNSKVATGDDCISIGPGTANMLVQKVACGPGHGISIGSLAKD VREQGVQNITVRSTTFTGTTNGFRIKAWGKPSNGFARNILFQRATMRNVENPIIIDQQYCPDKNCPQSGSGIQVSDVTYRDIQGTSATRVAVNFDCSRSK PCKGIRLHNVKLTYRSRAAAVASCKYAD |
Full Sequence |
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Protein Sequence Length: 405 Download |
MAPQSNKFNL HSTLISVILL VLLTLLTASP AEAAGRRPQF NVVRFGAKPD GRTDSTNAFL 60 AAWNRACGSR QRPILYVPRG RYLTRTMTFN GPCKNRNIFF KIDGTLVAPS NFWTIGNNAN 120 WIGFRHVNGV TISGGLLDAR GKALWACKKS GWHCPSGATT LEISNSRNVV VSRLTSVNSQ 180 MFNIVVNYGQ NVKFQGVRVY NPGNSPNTDG IHVQFSTGVS IVNSKVATGD DCISIGPGTA 240 NMLVQKVACG PGHGISIGSL AKDVREQGVQ NITVRSTTFT GTTNGFRIKA WGKPSNGFAR 300 NILFQRATMR NVENPIIIDQ QYCPDKNCPQ SGSGIQVSDV TYRDIQGTSA TRVAVNFDCS 360 RSKPCKGIRL HNVKLTYRSR AAAVASCKYA DGYAIGFVQP RSCL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 3.0e-82 | 67 | 390 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 2.0e-83 | 40 | 404 | 373 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 3.0e-86 | 29 | 401 | 381 | + polygalacturonase ADPG | ||
PLN02188 | PLN02188 | 2.0e-104 | 38 | 403 | 376 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 4.0e-139 | 40 | 404 | 366 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAC64184.1 | 0 | 15 | 404 | 10 | 393 | endopolygalacturonase [Prunus persica] |
GenBank | ABD33834.1 | 0 | 15 | 404 | 10 | 393 | polygalacturonase [Prunus domestica subsp. insititia] |
GenBank | ABV32553.1 | 0 | 15 | 404 | 10 | 393 | endopolygalacturonase [Prunus persica] |
RefSeq | XP_002309718.1 | 0 | 18 | 404 | 10 | 392 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529090.1 | 0 | 18 | 404 | 11 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 3e-23 | 135 | 379 | 117 | 365 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 0.00000000000002 | 29 | 395 | 10 | 360 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1nhc_F | 0.00000000004 | 207 | 355 | 152 | 301 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.00000000004 | 207 | 355 | 152 | 301 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.00000000004 | 207 | 355 | 152 | 301 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |