y
Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10022817 |
Family | PL1 |
Protein Properties | Length: 436 Molecular Weight: 48086.3 Isoelectric Point: 8.2705 |
Chromosome | Chromosome/Scaffold: 8 Start: 265138 End: 268295 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 149 | 354 | 0 |
IQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGANVHIAYGACLTIQFVTNVIIHGLHIHDCKPTGNAMVRSSPTHYGWRSMADGDAVSIFGSSHIWVD HNSLSNCADGLVDAVMGSTAITISNNYFTHHNEVILLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSQ GNRYLA |
Full Sequence |
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Protein Sequence Length: 436 Download |
MADVSFRFIP LAVLLLVLLM FAAVNAAPAE KESLQQHQQL NLSKVNDGAL NEHAVKNPEE 60 IAESVNESIM NSTARRNLGY FSCSTGNPID DCWRCDPYWQ AHRKRLANCA IGFGRNAIGG 120 RDGRYYVVTD PNDDDPVNPR PGTLRHAVIQ DRPLWIVFKR DMVITLKQEL IMNSFKTIDG 180 RGANVHIAYG ACLTIQFVTN VIIHGLHIHD CKPTGNAMVR SSPTHYGWRS MADGDAVSIF 240 GSSHIWVDHN SLSNCADGLV DAVMGSTAIT ISNNYFTHHN EVILLGHSDS YVRDKQMQVT 300 IAYNHFGEGL IQRMPRCRHG YFHVVNNDYT HWEMYAIGGS ADPTINSQGN RYLAPNNPFA 360 KEATKRVDTY NGVWKGWNWR SQGDLFLNGA YFTASGTRAG ASYARASSLA AKPSSLVGMM 420 TGGAGALTCR RGRSC* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 5.0e-27 | 174 | 370 | 209 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 3.0e-70 | 167 | 352 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 2.0e-81 | 161 | 356 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAX88800.1 | 0 | 4 | 435 | 3 | 437 | ripening-related pectate lyase [Mangifera indica] |
EMBL | CAN75298.1 | 0 | 24 | 435 | 32 | 445 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002265100.1 | 0 | 24 | 435 | 32 | 445 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002297822.1 | 0 | 30 | 435 | 41 | 450 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002521130.1 | 0 | 15 | 435 | 15 | 441 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 87 | 428 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 87 | 428 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 8e-17 | 156 | 354 | 50 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.000000000000002 | 177 | 329 | 135 | 301 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pcl_A | 0.0000000000007 | 167 | 356 | 73 | 280 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |