Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10023101 |
Family | GH28 |
Protein Properties | Length: 451 Molecular Weight: 49124.8 Isoelectric Point: 6.8851 |
Chromosome | Chromosome/Scaffold: 325 Start: 393520 End: 396049 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 74 | 424 | 0 |
RGGTLLYIPPGEYLTESFKLTSHMTLYLARGAIIKATQETTNWPLIAPLPSYGRGRERPGGRYVSFIQADGVRDVIITGENGTIDGQGDVWWNMWRQRTL EYTRPHLIEFINSTDIIISNVIFKDSPFWNIHPVYSSNFVIRYVTILAPRDSPNTDGVDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYSRPSSGI TIRRITGSSPFAGIAVGSETSGGVENVLAENINLYNMGVGLHVKTNQGRGGFIKNITFAHVYMEEVRTGIKIAGDVGDHPDDGFDPNALPVVKGLTFHSI WGEKVLQPGLIRGLKDSPFTNVCLSNINLHSVPPPATRTPTQPWKCTDVKG |
Full Sequence |
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Protein Sequence Length: 451 Download |
MQCFLLLALF SCCCAGVFRT GSAAEVVTCS GIVPMRHRND KISITDYGGV GDGKTLNTKA 60 FKEAIYRIEH LKRRGGTLLY IPPGEYLTES FKLTSHMTLY LARGAIIKAT QETTNWPLIA 120 PLPSYGRGRE RPGGRYVSFI QADGVRDVII TGENGTIDGQ GDVWWNMWRQ RTLEYTRPHL 180 IEFINSTDII ISNVIFKDSP FWNIHPVYSS NFVIRYVTIL APRDSPNTDG VDPDSSSNVC 240 IEDSYISTGD DLVAVKSGWD EYGIAYSRPS SGITIRRITG SSPFAGIAVG SETSGGVENV 300 LAENINLYNM GVGLHVKTNQ GRGGFIKNIT FAHVYMEEVR TGIKIAGDVG DHPDDGFDPN 360 ALPVVKGLTF HSIWGEKVLQ PGLIRGLKDS PFTNVCLSNI NLHSVPPPAT RTPTQPWKCT 420 DVKGASVQVI PSPCSELAST IPSGSCSDHF * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 7.0e-23 | 36 | 450 | 438 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 2.0e-26 | 39 | 445 | 421 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 4.0e-28 | 42 | 402 | 373 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 4.0e-32 | 139 | 423 | 291 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 3.0e-52 | 43 | 415 | 408 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACC91250.1 | 0 | 5 | 450 | 4 | 444 | glycoside hydrolase family 28 protein [Arabidopsis halleri] |
EMBL | CBI34471.1 | 0 | 2 | 447 | 1 | 444 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_194113.1 | 0 | 5 | 450 | 4 | 444 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002304552.1 | 0 | 35 | 450 | 1 | 412 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002509949.1 | 0 | 3 | 450 | 12 | 446 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 7e-37 | 41 | 399 | 27 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 7e-37 | 41 | 399 | 27 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 7e-37 | 41 | 399 | 27 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 7e-37 | 41 | 399 | 27 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 8e-20 | 86 | 339 | 52 | 304 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |