Basic Information | |
---|---|
Species | Linum usitatissimum |
Cazyme ID | Lus10023106 |
Family | PL4 |
Protein Properties | Length: 854 Molecular Weight: 93362 Isoelectric Point: 9.1706 |
Chromosome | Chromosome/Scaffold: 325 Start: 434048 End: 438099 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
PL4 | 216 | 824 | 0 |
PGAVKLTSDDKHVTIDNGIMQLVLSNPSGHISAIKYHGANNLLDTYEPQLYGGYFDVAFQSLPGKEGKVEIVSTTKYTIITQKEDIVEVSFSRTWSPGAP SYQVPLNVDKRYIVRKGDSGFYAYVVVEKLKGWPDVDMNLHRMAFKPNKTLFNYMALTDEIQLVMPVEADRVAGTPLAYKEAVQLTHPVSDPKLKDQVDD KYEYTLEKKDLKLKGWISDMANLGLWFIAPSDEYMNGGPKKKELTCHCGPTCVMIFTSIHTYGLDLFTEYRNGEPWKKVFGPIFIYLNSNGDRTTLWNDA KLQLEKEKRMWPYSFVQHPDYLPAAQRGIVTGKLLVDDKYVSPTPTQASRASVGLAMPGTTDDAWQLEIKGYNFWTEADDHGNFVIRNVRPGDYNLYGYV PGVVGSFRHRQLITVKPGDNINLGRVVFTPPRSGPTLWEIGIPDRSANEFFVPDPDPKFVNTFWLNKPKDKYRQYGLWARYPELYPKEDLVFEVGVSKYE KDWYFEHVLRSDGHIFNPTIWKVVFDLPEVVPGNYAIQMALAAAQMTNTFVYINDPKAKRAHFSTGTVGTDNAIARHGNHGMYRFFNGTLPSTLFVKGRN TMFIRPAKS |
Full Sequence |
---|
Protein Sequence Length: 854 Download |
MELCKLTWQF YITLILCLAT QSESSGHPGG IHVNPHGGAK QASGHPGGIH NTSHGAAKQA 60 SGHPGGIHIT PHGAAKQASG HPGGIHITPH GAAKQASGHP GGIHITPHGA AKQASGHPGG 120 IHITPHGAAK QASGHPGGIH ITPHGAAKQA SGHPGGIHIT PHGAAKQASG HPGGIHITPH 180 GAAKQASGHP GGIHITPPGA VKHPSGHPGG FNTTPPGAVK LTSDDKHVTI DNGIMQLVLS 240 NPSGHISAIK YHGANNLLDT YEPQLYGGYF DVAFQSLPGK EGKVEIVSTT KYTIITQKED 300 IVEVSFSRTW SPGAPSYQVP LNVDKRYIVR KGDSGFYAYV VVEKLKGWPD VDMNLHRMAF 360 KPNKTLFNYM ALTDEIQLVM PVEADRVAGT PLAYKEAVQL THPVSDPKLK DQVDDKYEYT 420 LEKKDLKLKG WISDMANLGL WFIAPSDEYM NGGPKKKELT CHCGPTCVMI FTSIHTYGLD 480 LFTEYRNGEP WKKVFGPIFI YLNSNGDRTT LWNDAKLQLE KEKRMWPYSF VQHPDYLPAA 540 QRGIVTGKLL VDDKYVSPTP TQASRASVGL AMPGTTDDAW QLEIKGYNFW TEADDHGNFV 600 IRNVRPGDYN LYGYVPGVVG SFRHRQLITV KPGDNINLGR VVFTPPRSGP TLWEIGIPDR 660 SANEFFVPDP DPKFVNTFWL NKPKDKYRQY GLWARYPELY PKEDLVFEVG VSKYEKDWYF 720 EHVLRSDGHI FNPTIWKVVF DLPEVVPGNY AIQMALAAAQ MTNTFVYIND PKAKRAHFST 780 GTVGTDNAIA RHGNHGMYRF FNGTLPSTLF VKGRNTMFIR PAKSTTYAFA GVMYDYIRLE 840 APPTSGPHPV TVL* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd10316 | RGL4_M | 1.0e-24 | 541 | 639 | 99 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 3.0e-36 | 653 | 840 | 190 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 1.0e-57 | 219 | 511 | 298 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 8.0e-64 | 200 | 413 | 216 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_179847.1 | 0 | 228 | 842 | 62 | 674 | lyase [Arabidopsis thaliana] |
RefSeq | NP_195516.2 | 0 | 204 | 842 | 27 | 664 | lyase [Arabidopsis thaliana] |
RefSeq | XP_002308510.1 | 0 | 191 | 842 | 8 | 671 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002319997.1 | 0 | 228 | 847 | 1 | 622 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527245.1 | 0 | 228 | 842 | 2 | 618 | lyase, putative [Ricinus communis] |