Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10023319 |
Family | GT5 |
Protein Properties | Length: 1035 Molecular Weight: 117175 Isoelectric Point: 5.8323 |
Chromosome | Chromosome/Scaffold: 98 Start: 528586 End: 533646 |
Description | starch synthase 4 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT5 | 538 | 1023 | 0 |
HVIHIAAEMAPVAKVGGLGDVVSGLSKALQKKGHLVEIILPKYDCMQYDRIYDLKALDLVVESYFEGRLYKNKIWIGVVEGLPVYFIEPLHPGKFFWRGA FYGEHDDFKRFSFFSRAALELLHQSGKKPDIIHCHDWQTAFIAPLYWEIYAPKGLNSARICFTCHNFEYQGAAPASELASCGLDVQHLNRPDRMQDNSAH DRVNPVKGAVVFSNIVTTVSPTYAQEVLTAAGGKGLHSTLNSHSRKFIGILNGIDLDAWNPSTDGFLSTQYSANDLEGKAYNKTALRRDLGLSTANVRQP LVGCITRLVPQKGVHLIRHAIYRTLELGGQFVLLGSSPVAQIQQEFEGIANQFQNNGNVRLILKYDEALSHSIYAASDMFIIPSVFEPCGLTQMIAMRYG SVPIVRKTGGLNDSVFDVDDDMVPLQFRNGFTFLNPDEEAFSSVLERAFKHYKNDTEGWQELVRRIMKLDFSWGTSAAHYEELYSK |
Full Sequence |
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Protein Sequence Length: 1035 Download |
MATKPSSSCF INQALAGFSY GGNQRNVRFS PPQHHQLLLP AIRHRHFSCR YQLKKQQLKK 60 ASTESTAESY EAAAPRKDVP NLDADASIDE EDTSRKDSQS RTETEECVGG QELETTVDVE 120 HIHDDDSEHR ETPTESEEAE SLALNLNVDG EKRLSSVQLG DLIGMIRKAE KNVHLLNDAR 180 IRAVEDLDKI LSEKESLQGE INVLETRLAE TDAKLRVASQ EKTHVQLLEN QLEELRNELT 240 HRSPAVGDLL HHRENQPRNK EASLVPYADT TSLGEELNSL RTENMFLKQD LEVLKAELNA 300 IRNTDERVIT LEKDRSTIKS SLRDLESLVS TSQADVSKLS SLKVKHKDLW AKVESQQSLL 360 DKVTKQADRA LIVLQQNQEL REKVHKLEES LEEANIYKLS SEKLQDYNEV MQQKIKLLEE 420 HLQRSDDEIH SYVQLYHESI QEFQDTLSNL IEESKERALD GPVDDMPSDF WSRLLLKIDG 480 WLLEKKMSTD DAKLLRDLVR KRDRKIYDAY MQCEEKDEHD SISTFQKLTS QPESLGLHVI 540 HIAAEMAPVA KVGGLGDVVS GLSKALQKKG HLVEIILPKY DCMQYDRIYD LKALDLVVES 600 YFEGRLYKNK IWIGVVEGLP VYFIEPLHPG KFFWRGAFYG EHDDFKRFSF FSRAALELLH 660 QSGKKPDIIH CHDWQTAFIA PLYWEIYAPK GLNSARICFT CHNFEYQGAA PASELASCGL 720 DVQHLNRPDR MQDNSAHDRV NPVKGAVVFS NIVTTVSPTY AQEVLTAAGG KGLHSTLNSH 780 SRKFIGILNG IDLDAWNPST DGFLSTQYSA NDLEGKAYNK TALRRDLGLS TANVRQPLVG 840 CITRLVPQKG VHLIRHAIYR TLELGGQFVL LGSSPVAQIQ QEFEGIANQF QNNGNVRLIL 900 KYDEALSHSI YAASDMFIIP SVFEPCGLTQ MIAMRYGSVP IVRKTGGLND SVFDVDDDMV 960 PLQFRNGFTF LNPDEEAFSS VLERAFKHYK NDTEGWQELV RRIMKLDFSW GTSAAHYEEL 1020 YSKSVARARA VNRA* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02316 | PLN02316 | 1.0e-141 | 537 | 1021 | 492 | + synthase/transferase | ||
PLN02939 | PLN02939 | 0 | 2 | 1024 | 1023 | + transferase, transferring glycosyl groups | ||
TIGR02095 | glgA | 0 | 537 | 1024 | 491 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
cd03791 | GT1_Glycogen_synthase_DULL1_like | 0 | 538 | 1023 | 488 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
PRK00654 | glgA | 0 | 537 | 1023 | 491 | + glycogen synthase; Provisional |
Gene Ontology | |
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GO Term | Description |
GO:0009058 | biosynthetic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACT09058.1 | 0 | 7 | 1033 | 6 | 1000 | starch synthase IV precursor [Solanum lycopersicum] |
RefSeq | NP_193558.3 | 0.0000000001 | 1 | 193 | 1 | 219 | ATSS4; transferase, transferring glycosyl groups [Arabidopsis thaliana] |
RefSeq | NP_193558.3 | 0 | 298 | 1031 | 303 | 1036 | ATSS4; transferase, transferring glycosyl groups [Arabidopsis thaliana] |
RefSeq | XP_002274716.1 | 0 | 1 | 1032 | 1 | 1009 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002298514.1 | 0 | 126 | 1033 | 1 | 887 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3d1j_A | 0 | 537 | 1023 | 1 | 475 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 3guh_A | 0 | 537 | 1023 | 1 | 475 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 2r4u_A | 0 | 537 | 1023 | 1 | 475 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 2r4t_A | 0 | 537 | 1023 | 1 | 475 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 2qzs_A | 0 | 537 | 1023 | 1 | 475 | A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With Adp And Glucose(Wtgsb) |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GO851132 | 333 | 612 | 944 | 0 |
GW865616 | 298 | 643 | 940 | 0 |
CF828776 | 286 | 662 | 947 | 0 |
CB893818 | 281 | 536 | 816 | 0 |
DV124304 | 258 | 601 | 858 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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