Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10023623 |
Family | PL1 |
Protein Properties | Length: 440 Molecular Weight: 48804.1 Isoelectric Point: 7.8727 |
Chromosome | Chromosome/Scaffold: 505 Start: 212505 End: 214337 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 160 | 359 | 0 |
WITFAHSMIITLSQELLINSNKTIDARGANVRIAYGGQLTLQFVDNVIIHSLHVHDIVPRSGGDIRSSADHFGHRSCSDGDGISLFGATNIWLDHISMSN CADGLIDVIVKSTAITISNSHFTKHNDVMLVGASDTETGDKVIQLTLAFNHFGRGLVQRMPRLRWGFAHVVNNDYTHWEMYAIGGNFNPTILSQGNRFVA |
Full Sequence |
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Protein Sequence Length: 440 Download |
MGESSVVLIV FVVLTSIWSL VISVAGDDHE YWRRRALEAH DRAKAAYHPD PLQVVDHLNL 60 QVHKALGDDS DNNSTRRELR NKKVEGPCEA LNPIDRCWRC DKNWAKNRKK LADCALGFGR 120 GTTGGKAGEF YVVTDASDSD TVHPKPGTLR HAVVQNRPLW ITFAHSMIIT LSQELLINSN 180 KTIDARGANV RIAYGGQLTL QFVDNVIIHS LHVHDIVPRS GGDIRSSADH FGHRSCSDGD 240 GISLFGATNI WLDHISMSNC ADGLIDVIVK STAITISNSH FTKHNDVMLV GASDTETGDK 300 VIQLTLAFNH FGRGLVQRMP RLRWGFAHVV NNDYTHWEMY AIGGNFNPTI LSQGNRFVAP 360 PNHASKEVTK REYTEEGVWK SWIWKSEQDL LENGAFFIQS GGHMRPTNSK DVISARHGSH 420 VSRLTRCSGA LDCFVNKPC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam04431 | Pec_lyase_N | 3.0e-13 | 26 | 79 | 54 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
COG3866 | PelB | 3.0e-27 | 174 | 357 | 196 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 3.0e-59 | 173 | 357 | 207 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 2.0e-71 | 167 | 361 | 206 | + Amb_all domain. |
Gene Ontology | |
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GO Term | Description |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN79927.1 | 0 | 26 | 439 | 29 | 439 | hypothetical protein [Vitis vinifera] |
EMBL | CBI22159.1 | 0 | 26 | 439 | 58 | 468 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002311599.1 | 0 | 10 | 439 | 1 | 429 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002330086.1 | 0 | 3 | 439 | 5 | 435 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002520133.1 | 0 | 1 | 439 | 4 | 440 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 92 | 431 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 92 | 431 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 1e-20 | 111 | 348 | 2 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.000000000000001 | 175 | 357 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pcl_A | 0.0000000000001 | 173 | 358 | 74 | 277 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |