| Basic Information | |
|---|---|
| Species | Linum usitatissimum |
| Cazyme ID | Lus10024439 |
| Family | PL1 |
| Protein Properties | Length: 383 Molecular Weight: 42318.7 Isoelectric Point: 7.599 |
| Chromosome | Chromosome/Scaffold: 16 Start: 929016 End: 931331 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| PL1 | 111 | 290 | 0 |
| IVFELSGTIHLNSYLNVSSYKTIDGRGQRIKLTGKGLRLKECEHVIVSNLEFEGGRGPDVDGVQIKPKSKHIWIDRCSLSDYDDGLIDISRESTDITISR CHFSRHDKTMLIGADASNVTDRCMRITIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVESQIYSQCNVYEA | |||
| Full Sequence |
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| Protein Sequence Length: 383 Download |
| MGNHHGHHKH HNGGRPNFPV PSPPFPPPAY ISGPPAMPNQ QAPSCSPPEM GTSLPYAHVD 60 STLRALAGQA EGFGRFSVGG LHGALHCVTS LADDGPGSLR EACRKKEPLW IVFELSGTIH 120 LNSYLNVSSY KTIDGRGQRI KLTGKGLRLK ECEHVIVSNL EFEGGRGPDV DGVQIKPKSK 180 HIWIDRCSLS DYDDGLIDIS RESTDITISR CHFSRHDKTM LIGADASNVT DRCMRITIHH 240 CFFDGTRQRH PRVRYAKVHL YNNYTRNWGI YAVCASVESQ IYSQCNVYEA GQKKVAFKYL 300 TEKATDREEP STGQMRSEGD LFVSGTQAGI MTAANEACIF HPSEYYSTWT VQPAGETLKQ 360 FIHGCTGWQP VPLPVDQPFA DQ* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam13229 | Beta_helix | 0.0003 | 146 | 292 | 150 | + Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases. | ||
| pfam00544 | Pec_lyase_C | 2.0e-39 | 106 | 288 | 203 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| COG3866 | PelB | 7.0e-48 | 77 | 357 | 300 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| smart00656 | Amb_all | 4.0e-68 | 125 | 291 | 179 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABK93648.1 | 0 | 1 | 382 | 1 | 386 | unknown [Populus trichocarpa] |
| GenBank | ABK96132.1 | 0 | 1 | 382 | 1 | 389 | unknown [Populus trichocarpa] |
| RefSeq | XP_002277576.1 | 0 | 26 | 377 | 16 | 369 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002309435.1 | 0 | 50 | 382 | 1 | 333 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002323433.1 | 0 | 50 | 382 | 1 | 333 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 2e-38 | 60 | 346 | 15 | 327 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 2e-38 | 60 | 346 | 15 | 327 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1vbl_A | 4e-25 | 127 | 288 | 130 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3vmw_A | 4e-24 | 132 | 360 | 82 | 318 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3vmv_A | 4e-24 | 132 | 360 | 82 | 318 | A Chain A, Crystal Structure Of Pectate Lyase Bsp165pela From Bacillus Sp. N165 |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| JG223264 | 284 | 50 | 333 | 0 |
| DY289690 | 305 | 53 | 353 | 0 |
| JG170798 | 246 | 138 | 383 | 0 |
| DY275282 | 332 | 52 | 381 | 0 |
| DY277275 | 309 | 54 | 362 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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