Basic Information | |
---|---|
Species | Linum usitatissimum |
Cazyme ID | Lus10024728 |
Family | AA3 |
Protein Properties | Length: 389 Molecular Weight: 42920 Isoelectric Point: 7.235 |
Chromosome | Chromosome/Scaffold: 349 Start: 967386 End: 968987 |
Description | Glucose-methanol-choline (GMC) oxidoreductase family protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
AA3 | 34 | 383 | 0 |
VKEGRVLGGTTAINGGFYSRASEEFVTKSGWDKQLVKESYEWVESTIITKPELTTWQAAVRSGFLEAGILPNNGFTWEHIQGTKIGGSTFDSQNKRHTSA DLLQMGRPENIIVLLNATVKSVIQQRHDTGDQTYEAYLKQPANRTCSSGEVILSAGALGSPQILLLSGIGPKPHLNRLNIPLILESNHVGLEGQDNPGIS ILVSSKPGQKPPDPPQVAGITKGFNFQGVIGPVSFNATRNRISIKLALPEPKGKLELNSTDPRTNPEVSYKYLERETWMDVWRWENVASYFHYHGGCVVG SVVDDDYRVVGVDGLRVVDGSMFSEAPGSNPMATVLMLCRYQGIKILVER |
Full Sequence |
---|
Protein Sequence Length: 389 Download |
MVLFYFVHLI GKLVEYNEPL ELMKRETSLF AQLVKEGRVL GGTTAINGGF YSRASEEFVT 60 KSGWDKQLVK ESYEWVESTI ITKPELTTWQ AAVRSGFLEA GILPNNGFTW EHIQGTKIGG 120 STFDSQNKRH TSADLLQMGR PENIIVLLNA TVKSVIQQRH DTGDQTYEAY LKQPANRTCS 180 SGEVILSAGA LGSPQILLLS GIGPKPHLNR LNIPLILESN HVGLEGQDNP GISILVSSKP 240 GQKPPDPPQV AGITKGFNFQ GVIGPVSFNA TRNRISIKLA LPEPKGKLEL NSTDPRTNPE 300 VSYKYLERET WMDVWRWENV ASYFHYHGGC VVGSVVDDDY RVVGVDGLRV VDGSMFSEAP 360 GSNPMATVLM LCRYQGIKIL VERNKCEK* |
Functional Domains Download unfiltered results here | ||||||
---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
PLN02785 | PLN02785 | 9.0e-7 | 318 | 383 | 66 | + Protein HOTHEAD |
TIGR01810 | betA | 2.0e-11 | 37 | 229 | 226 | + choline dehydrogenase. Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both gram-positive and gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti, this enzyme is found associated in a transciptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other gram-positive organisms have been shown to employ a different enzymatic system, utlizing a soluable choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified [Cellular processes, Adaptations to atypical conditions]. |
COG2303 | BetA | 8.0e-13 | 37 | 232 | 240 | + Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] |
TIGR03970 | Rv0697 | 4.0e-16 | 37 | 306 | 308 | + dehydrogenase, Rv0697 family. This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function. |
PLN02785 | PLN02785 | 8.0e-75 | 38 | 305 | 328 | + Protein HOTHEAD |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_563939.1 | 0 | 13 | 383 | 86 | 503 | glucose-methanol-choline (GMC) oxidoreductase family protein [Arabidopsis thaliana] |
RefSeq | XP_002312249.1 | 0 | 37 | 387 | 86 | 491 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002315047.1 | 0 | 37 | 382 | 92 | 489 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002315048.1 | 0 | 36 | 383 | 122 | 526 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002522448.1 | 0 | 37 | 383 | 123 | 525 | glucose-methanol-choline (gmc) oxidoreductase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3red_L | 0 | 37 | 386 | 100 | 521 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
PDB | 3red_K | 0 | 37 | 386 | 100 | 521 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
PDB | 3red_J | 0 | 37 | 386 | 100 | 521 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
PDB | 3red_I | 0 | 37 | 386 | 100 | 521 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
PDB | 3red_H | 0 | 37 | 386 | 100 | 521 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
EST Download unfiltered results here | ||||
---|---|---|---|---|
Hit | Length | Start | End | EValue |
JG723859 | 262 | 35 | 276 | 0 |
CV478245 | 192 | 37 | 208 | 0 |
CO167807 | 290 | 37 | 296 | 0 |
FP053891 | 199 | 35 | 215 | 0 |
CV036145 | 215 | 37 | 234 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
---|