| Basic Information | |
|---|---|
| Species | Linum usitatissimum |
| Cazyme ID | Lus10025290 |
| Family | PL1 |
| Protein Properties | Length: 347 Molecular Weight: 38475.5 Isoelectric Point: 7.48 |
| Chromosome | Chromosome/Scaffold: 339 Start: 378475 End: 380579 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| PL1 | 75 | 254 | 0 |
| IVFELSGTIHLNSYLNVSSYKTIDGRGQRIKLTGKGLRLKECEHVIVCNLEFEGGRGPDVDGIQIKPKSKHIWIDRCSLSDYDDGLIDITRESTDITISR CHFSRHDKTMLIGADASNITDRCMRITIHHCFFDGTRQRHPRVRYAKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 347 Download |
| MANQQAPSCS PPEMGTSLPY AHVDSTLRAL AGQAEGFGRF SVGGLHGALY CVTTLSDDGP 60 GSLREACRKK EPLWIVFELS GTIHLNSYLN VSSYKTIDGR GQRIKLTGKG LRLKECEHVI 120 VCNLEFEGGR GPDVDGIQIK PKSKHIWIDR CSLSDYDDGL IDITRESTDI TISRCHFSRH 180 DKTMLIGADA SNITDRCMRI TIHHCFFDGT RQRHPRVRYA KVHLYNNYTR NWGIYAVCAS 240 VESQIYSQCN IYEAGQKKVA FKYLTEKATD REEASSGQIR SEGDIFVTGT QAGIMSAASE 300 ACIFHPREYY SSWTVQPAGE ILKQLLHGCT GWQAVPLPVD QPFAAQ* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam13229 | Beta_helix | 0.005 | 110 | 256 | 150 | + Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases. | ||
| pfam00544 | Pec_lyase_C | 7.0e-40 | 70 | 250 | 201 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| COG3866 | PelB | 5.0e-49 | 24 | 321 | 320 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| smart00656 | Amb_all | 2.0e-69 | 89 | 255 | 179 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABK93648.1 | 0 | 5 | 346 | 43 | 386 | unknown [Populus trichocarpa] |
| GenBank | ABK96132.1 | 0 | 14 | 346 | 57 | 389 | unknown [Populus trichocarpa] |
| EMBL | CBI32661.1 | 0 | 16 | 345 | 2 | 329 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002309435.1 | 0 | 14 | 346 | 1 | 333 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002323433.1 | 0 | 14 | 346 | 1 | 333 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 3e-40 | 24 | 324 | 15 | 341 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 3e-40 | 24 | 324 | 15 | 341 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1vbl_A | 2e-25 | 91 | 252 | 130 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3zsc_A | 1e-24 | 41 | 335 | 21 | 332 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 3vmw_A | 1e-22 | 96 | 253 | 82 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
 | ||||
| Hit | Length | Start | End | EValue |
| JG223264 | 284 | 14 | 297 | 0 |
| DY289690 | 305 | 17 | 317 | 0 |
| JG222896 | 246 | 102 | 347 | 0 |
| JG223204 | 246 | 102 | 347 | 0 |
| JG067757 | 246 | 102 | 347 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
