| Basic Information | |
|---|---|
| Species | Linum usitatissimum |
| Cazyme ID | Lus10025995 |
| Family | GH5 |
| Protein Properties | Length: 701 Molecular Weight: 78592.7 Isoelectric Point: 8.1647 |
| Chromosome | Chromosome/Scaffold: 319 Start: 239985 End: 245260 |
| Description | Glycosyl hydrolase superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH5 | 307 | 629 | 3.4e-31 |
| GNLFYANGFNAYWLMYVASDPSQRSKVSAAFQEAKSHDLTVARTWAFSDGGYRPLQYAPGSYNQDMFKGLDFVVSEARRHGVKLIMSLVNNYDSFGGKKQ YVNWARAQSGRYLASDDDFFTDPVVKGYYKNHIQTVLNRQNTFTGIRYKDDSTIMAWELMNEPRCTSDSSGRTIQAWITEMASFVKSIDRKHLLEAGLEG FYGPSTPQKMNINPSVQVGTDFIANNKVPGIDFATVHSYPDQWLTNSNEQSQLSFMNNWLNAHIQDAQYIIGKPILIAEFGKSWKDSGFTTNQRDQMFNA VYYKTYASAKRGGAAGGALFWQL | |||
| Full Sequence |
|---|
| Protein Sequence Length: 701 Download |
| MELASSLSAA FPADKLAPNS IPSFTTSRHF CERNFSRATQ IRIKATAGGF TSRKRNPPRR 60 RLYSLNNQLL IDEQELDEDD GDEEGQEEDE YDTVDDAAIL SLSMKPDRTM ALLDDYEMEE 120 LDYSADPNHR SGFVAVLGKP NVGKSTLSNQ MIGQKLCIVT DKPQTTRHRI LGICSAPEYQ 180 IVLYDTPGVM QKQMHKLDTM MMKNVRRAAV DADCVLVIVD ASKTPEKIDE VLEEGGSGLG 240 EDVPVLLVLN KKDLIKPGEI AKKLQVATAA RLDIEDFLQK KVYIEGFINA AGDDFIRTRG 300 THFLLNGNLF YANGFNAYWL MYVASDPSQR SKVSAAFQEA KSHDLTVART WAFSDGGYRP 360 LQYAPGSYNQ DMFKGLDFVV SEARRHGVKL IMSLVNNYDS FGGKKQYVNW ARAQSGRYLA 420 SDDDFFTDPV VKGYYKNHIQ TVLNRQNTFT GIRYKDDSTI MAWELMNEPR CTSDSSGRTI 480 QAWITEMASF VKSIDRKHLL EAGLEGFYGP STPQKMNINP SVQVGTDFIA NNKVPGIDFA 540 TVHSYPDQWL TNSNEQSQLS FMNNWLNAHI QDAQYIIGKP ILIAEFGKSW KDSGFTTNQR 600 DQMFNAVYYK TYASAKRGGA AGGALFWQLL TEGMDSFRDG YEVVLGETSS TTNLIRQQSH 660 KLYQIRKIFA RIRNAKRWKR AGGGARMSGR RNGGRKGIGN * 720 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG1159 | Era | 1.0e-39 | 127 | 264 | 138 | + GTPase [General function prediction only] | ||
| PRK00089 | era | 5.0e-48 | 127 | 265 | 140 | + GTPase Era; Reviewed | ||
| cd04163 | Era | 6.0e-52 | 129 | 264 | 136 | + E. coli Ras-like protein (Era) is a multifunctional GTPase. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005525 | GTP binding |
| GO:0005622 | intracellular |
| GO:0005975 | carbohydrate metabolic process |
| GO:0015093 | ferrous iron transmembrane transporter activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABV32548.1 | 0 | 291 | 700 | 25 | 433 | endo-1,4-beta-mannosidase protein 2 [Prunus persica] |
| GenBank | ABY58035.1 | 0 | 291 | 700 | 25 | 433 | mannase [Prunus salicina] |
| GenBank | ACN78662.1 | 0 | 291 | 676 | 25 | 409 | endo-beta-mannanase [Actinidia arguta] |
| RefSeq | XP_002264115.1 | 0 | 291 | 700 | 25 | 433 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002327685.1 | 0 | 291 | 700 | 25 | 435 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1rh9_A | 0 | 291 | 665 | 2 | 372 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
| PDB | 3pzq_A | 0 | 299 | 659 | 17 | 380 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
| PDB | 3pzo_A | 0 | 299 | 659 | 17 | 380 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
| PDB | 3pzn_A | 0 | 299 | 659 | 17 | 380 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
| PDB | 3pzm_A | 0 | 299 | 659 | 17 | 380 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DY296355 | 340 | 340 | 679 | 0 |
| DW000538 | 293 | 291 | 583 | 0 |
| EB427830 | 292 | 291 | 582 | 0 |
| HO798074 | 368 | 311 | 678 | 0 |
| CK938256 | 301 | 362 | 662 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
