Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10026183 |
Family | GH28 |
Protein Properties | Length: 398 Molecular Weight: 43467.3 Isoelectric Point: 7.2444 |
Chromosome | Chromosome/Scaffold: 898 Start: 34040 End: 35444 |
Description | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 63 | 387 | 0 |
DGCEWNGKARILVPAGHYMCDAVEFSGPCRGSMAFVMKGLLTPPDRLKHIEDTNCWVAFSYIDNFLLSGHGTFDARGYTSPTPKERDHSLNFRFINNGTI HHVQSVDARNVHMELFGCHNMLLRNIMIKAPGDSHNTDGIKFGSCTNIKLENSVIGTGDDCVAILGGTHNLDISKVFCGPGHGISIGSMGYYPNNENDIV TGVTVRDCSFQNTSDGVRIKTWASPYTGRAANISYSNIRMMGVQNPIVIDQFYCPEANCNSKVQSHVRVQDVTYDNIWGTSKRDVAMKLNCSATFGCKGI VMKDINLVQENGKSANAMCNNVDSK |
Full Sequence |
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Protein Sequence Length: 398 Download |
MDLVMGFAKL SVLLLVLASI RGGIATDDDD DDPNAKVFNV MNYGARADGK TDNSQAFLRA 60 WRDGCEWNGK ARILVPAGHY MCDAVEFSGP CRGSMAFVMK GLLTPPDRLK HIEDTNCWVA 120 FSYIDNFLLS GHGTFDARGY TSPTPKERDH SLNFRFINNG TIHHVQSVDA RNVHMELFGC 180 HNMLLRNIMI KAPGDSHNTD GIKFGSCTNI KLENSVIGTG DDCVAILGGT HNLDISKVFC 240 GPGHGISIGS MGYYPNNEND IVTGVTVRDC SFQNTSDGVR IKTWASPYTG RAANISYSNI 300 RMMGVQNPIV IDQFYCPEAN CNSKVQSHVR VQDVTYDNIW GTSKRDVAMK LNCSATFGCK 360 GIVMKDINLV QENGKSANAM CNNVDSKTYG VRKPACA* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 4.0e-79 | 34 | 388 | 360 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 1.0e-79 | 73 | 387 | 323 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 1.0e-82 | 39 | 396 | 372 | + polygalacturonase ADPG | ||
PLN02155 | PLN02155 | 4.0e-87 | 37 | 394 | 365 | + polygalacturonase | ||
PLN02188 | PLN02188 | 9.0e-97 | 34 | 394 | 374 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_175003.1 | 0 | 36 | 385 | 29 | 390 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_175004.1 | 0 | 10 | 390 | 13 | 395 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_175005.1 | 0 | 36 | 390 | 29 | 395 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002300425.1 | 0 | 36 | 394 | 1 | 364 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002314146.1 | 0 | 5 | 394 | 1 | 388 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 1e-18 | 71 | 386 | 24 | 332 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 1e-18 | 71 | 386 | 24 | 332 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 1e-18 | 71 | 386 | 24 | 332 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 1e-18 | 71 | 386 | 24 | 332 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 1e-18 | 71 | 386 | 24 | 332 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |