Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10026184 |
Family | GH28 |
Protein Properties | Length: 393 Molecular Weight: 42814 Isoelectric Point: 7.9423 |
Chromosome | Chromosome/Scaffold: 898 Start: 36956 End: 38512 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 60 | 382 | 0 |
DGCEWRGKARILVPPGHFMCDSVEFNGPCQGSMAFVMKGLLTPPDRLRTSPWVAFRYITNFLLSGHGTFDARGYAPPTPKARDHSLSFAFIKNGTIHHVR SVDARNVHMELFACDKMLLRNIMIKAPGDSPNTDGIKLGACTNVKIENSVIGTGDDCIAILGGTHNLDISKVFCGPGHGISIGSMGYYPDNEEKDIVTGV TVRDCTFQNTSDGVRIKTWASPYEGLAANISYSNIRMQSVQNPINIDQFYCPRANCNSKVQSHVRIEDVRYENIWGTSKRDVAMKLNCSGKFGGCKGIVM KNINLVQENGKSANAMCNNVADK |
Full Sequence |
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Protein Sequence Length: 393 Download |
MDLVMGFAKL SVLLLVLASI GGGIAMDDDD DDRVFNVLDY GARADGKTDN SQAFLRAWKD 60 GCEWRGKARI LVPPGHFMCD SVEFNGPCQG SMAFVMKGLL TPPDRLRTSP WVAFRYITNF 120 LLSGHGTFDA RGYAPPTPKA RDHSLSFAFI KNGTIHHVRS VDARNVHMEL FACDKMLLRN 180 IMIKAPGDSP NTDGIKLGAC TNVKIENSVI GTGDDCIAIL GGTHNLDISK VFCGPGHGIS 240 IGSMGYYPDN EEKDIVTGVT VRDCTFQNTS DGVRIKTWAS PYEGLAANIS YSNIRMQSVQ 300 NPINIDQFYC PRANCNSKVQ SHVRIEDVRY ENIWGTSKRD VAMKLNCSGK FGGCKGIVMK 360 NINLVQENGK SANAMCNNVA DKTYGVMKPA CA* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 2.0e-74 | 33 | 379 | 356 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 5.0e-76 | 62 | 379 | 328 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 1.0e-83 | 36 | 391 | 374 | + polygalacturonase ADPG | ||
PLN02155 | PLN02155 | 5.0e-87 | 34 | 389 | 371 | + polygalacturonase | ||
PLN02188 | PLN02188 | 1.0e-96 | 35 | 389 | 374 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF71796.1 | 0 | 33 | 389 | 33 | 407 | AC013430_5 F3F9.9 [Arabidopsis thaliana] |
RefSeq | NP_175003.1 | 0 | 33 | 389 | 29 | 399 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_177961.2 | 0 | 33 | 389 | 33 | 399 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002300425.1 | 0 | 33 | 389 | 1 | 364 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002314146.1 | 0 | 5 | 389 | 1 | 388 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 1e-17 | 151 | 331 | 160 | 336 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 5e-16 | 141 | 379 | 109 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 5e-16 | 141 | 379 | 109 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 5e-16 | 141 | 379 | 109 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 5e-16 | 141 | 379 | 109 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |