y
Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10026311 |
Family | GT47 |
Protein Properties | Length: 846 Molecular Weight: 95523.6 Isoelectric Point: 6.2852 |
Chromosome | Chromosome/Scaffold: 898 Start: 585223 End: 590798 |
Description | exostosin family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 377 | 677 | 0 |
KKRPLVYVYDLPPEFNSLLLEGRHFKLECVNRIYDDRNATIWTDQLYGSQIAIYESLLASAHRTLNGEEADFFFVPVLDSCIITRADDAPHLGLEEHRGI RSSFTLEIYRKAYDHIVEHYPFWNRSLGRDHIWSFSWDEGACYAPKEIWNSMMLVHWGNTNSKHNHSTTAYWADNWNNITSDRRGTHPCFDPDKDLVLPA WKRPDASSLSMKLWARPLEMRKTLFYFNGNLGPAYEFGRPEASYSLGIRQKLAEEFGSSPNKDGKLGKQHVDDVIVTSMRTENYHVDLASSVFCGVLPGD Y |
Full Sequence |
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Protein Sequence Length: 846 Download |
MIAVVQKWKC SWSMTAGIAS AVALVSIVSL FLFPVDPSFD YLRIRDATLS RCVLPNGTLG 60 PGAGTGQVWQ NLQPSVDLHR RFPGDLHGAV VYRQTPWMAE IGRWLSGCDP FAKEASISEI 120 IGGRGCKDDC NGQGVCNYEL GALIVFITAL SYETLLPGSL TVSKYSLSHV IIADGVGEGC 180 SERIQLKCNH PTTPEQPYGR WVVSICATHC DTTRAMCFCG EGTKYPNRPV AEACGFQVNV 240 PVEPDAPKLT DWSKDDLENI FTTNSSKAGW CNVDPAEAYA STVKFKEECD CKYDGLSGRF 300 CEVPVQSVCI NQCSGHGHCR GGFCQCRSGW YGIDCSIPSV LSPLSGWPRW LRPSQLDIPE 360 NGNMSTKLFS LNALVKKKRP LVYVYDLPPE FNSLLLEGRH FKLECVNRIY DDRNATIWTD 420 QLYGSQIAIY ESLLASAHRT LNGEEADFFF VPVLDSCIIT RADDAPHLGL EEHRGIRSSF 480 TLEIYRKAYD HIVEHYPFWN RSLGRDHIWS FSWDEGACYA PKEIWNSMML VHWGNTNSKH 540 NHSTTAYWAD NWNNITSDRR GTHPCFDPDK DLVLPAWKRP DASSLSMKLW ARPLEMRKTL 600 FYFNGNLGPA YEFGRPEASY SLGIRQKLAE EFGSSPNKDG KLGKQHVDDV IVTSMRTENY 660 HVDLASSVFC GVLPGDYWLE MVGVAVWKIA SCKVVFLWSF RYSNFCIALS MDGIFLPYEN 720 VLNFVSFAVR IQEDEIPNLI KVLRAFNDTE IGFKLRNVQK LWQRFVYRDS LLLEAERQKT 780 ELGFVEDWAV EVSKLTEDDV FATFLQILHY KLHNDPWREQ VGDGNKDFGV PRECLREGSK 840 WKKDP* 900 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07974 | EGF_2 | 0.0003 | 311 | 335 | 27 | + EGF-like domain. This family contains EGF domains found in a variety of extracellular proteins. | ||
pfam03016 | Exostosin | 7.0e-45 | 376 | 746 | 372 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN80640.1 | 0 | 1 | 829 | 1 | 809 | hypothetical protein [Vitis vinifera] |
EMBL | CBI29877.1 | 0 | 1 | 835 | 29 | 818 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002277596.1 | 0 | 1 | 835 | 1 | 790 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002308967.1 | 0 | 2 | 839 | 1 | 793 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002526728.1 | 0 | 68 | 836 | 13 | 726 | catalytic, putative [Ricinus communis] |