| Basic Information | |
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| Species | Linum usitatissimum |
| Cazyme ID | Lus10026318 |
| Family | GH28 |
| Protein Properties | Length: 706 Molecular Weight: 77352.6 Isoelectric Point: 5.7768 |
| Chromosome | Chromosome/Scaffold: 898 Start: 612486 End: 616438 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
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| Family | Start | End | Evalue |
| GH28 | 295 | 625 | 0 |
| SCSSSSSSTCYVTFPPGTYLTATIHLRSNVILDIQPGAVLLGGPRLEDYPKQSSRWYVVLAENATDVGITGGGIVDGNGPLFVQKYNSVKNVMVSWNATG DCLGDECRPRLVGFIGCTNVRVWNVSFIQPAYWCFHLVRCSNSLIHDVSIYGDFNTPNNDGIDIEDSNNTFITRCHIDTGDDAICPKTYTGPLYNLTVTD CWIRTKSSAIKLGSASWFDFKGLTFDNITIVDSHRGLGFQIRDGGNVSDIVFSNINISTRYYDPSWWGRAEPIYVTTCARDSSSKEGSISNLVFVNITAH SENGIFLSGCKGGKLSNLRFTNVKLTYRRWT | |||
| Full Sequence |
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| Protein Sequence Length: 706 Download |
| MEQLLSAAPD ARSNETALDS VQFGDDIRPL ITVPTENSRS FTALLGLPAN QAMELLHSPP 60 DSTFKTSPDG PELYQPPHYF NADLLTFPAN AALIERAVLN NNNSSTTGNI SPGMKSITWA 120 TSFNKNRSHE SGSLMDSNFP AMMMPIMWPE IQENGSRQQY QQQWNSDAVH QPTWGKEDGH 180 SNFMTRENSL LSYVSSANSA SLPIAKIHPQ IKSNPPPCQR MPTLLLYSII LHFISSLSIL 240 PASSSSSSLP TTIQLPHPPS PTTAASVTDY GATGDGAHYD TYAIQSAIDS CSHSSCSSSS 300 SSTCYVTFPP GTYLTATIHL RSNVILDIQP GAVLLGGPRL EDYPKQSSRW YVVLAENATD 360 VGITGGGIVD GNGPLFVQKY NSVKNVMVSW NATGDCLGDE CRPRLVGFIG CTNVRVWNVS 420 FIQPAYWCFH LVRCSNSLIH DVSIYGDFNT PNNDGIDIED SNNTFITRCH IDTGDDAICP 480 KTYTGPLYNL TVTDCWIRTK SSAIKLGSAS WFDFKGLTFD NITIVDSHRG LGFQIRDGGN 540 VSDIVFSNIN ISTRYYDPSW WGRAEPIYVT TCARDSSSKE GSISNLVFVN ITAHSENGIF 600 LSGCKGGKLS NLRFTNVKLT YRRWTKFEGG LVDYRPGCQG LVKHGAAGMI MEHVQSLEVE 660 NVSMRWSGGE VAKEEWDNPL EFRPSTVNNV SFLNFHSGMY YDAAL* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam12708 | Pectate_lyase_3 | 2.0e-8 | 266 | 521 | 259 | + Pectate lyase superfamily protein. This family of proteins possesses a beta helical structure like Pectate lyase. This family is most closely related to glycosyl hydrolase family 28. | ||
| PLN02188 | PLN02188 | 2.0e-9 | 403 | 478 | 76 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02218 | PLN02218 | 5.0e-11 | 260 | 619 | 380 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 3.0e-15 | 372 | 621 | 278 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 7.0e-45 | 256 | 604 | 397 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
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| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAB41176.1 | 0 | 244 | 700 | 17 | 471 | putative protein [Arabidopsis thaliana] |
| RefSeq | NP_567055.1 | 0 | 244 | 700 | 17 | 471 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002282920.1 | 0 | 226 | 698 | 5 | 465 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
| RefSeq | XP_002282925.1 | 0 | 226 | 698 | 5 | 460 | PREDICTED: hypothetical protein isoform 2 [Vitis vinifera] |
| RefSeq | XP_002322693.1 | 0 | 251 | 700 | 1 | 442 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 5e-19 | 254 | 667 | 17 | 434 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 5e-19 | 254 | 667 | 17 | 434 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 5e-19 | 254 | 667 | 17 | 434 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 5e-19 | 254 | 667 | 17 | 434 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 2uvf_B | 6e-18 | 232 | 513 | 127 | 449 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| DY982615 | 299 | 346 | 644 | 0 |
| JK517244 | 261 | 373 | 633 | 0 |
| GR997483 | 266 | 394 | 659 | 0 |
| DV140576 | 261 | 335 | 595 | 0 |
| FE703127 | 271 | 433 | 703 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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