Basic Information | |
---|---|
Species | Linum usitatissimum |
Cazyme ID | Lus10026387 |
Family | CBM43 |
Protein Properties | Length: 446 Molecular Weight: 48501.9 Isoelectric Point: 6.7805 |
Chromosome | Chromosome/Scaffold: 898 Start: 906087 End: 907693 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
CBM43 | 328 | 407 | 3.6e-24 |
WCVVDNNKDMSNASSRALDACSAADCTALSPGGSCSNISWPGNITYAFNSYYQQHDQRQGSCDFGGLGLVTTVDPSYGTC | |||
GH17 | 52 | 308 | 0 |
AVESWVHDNVTRYFSAGKSGVRIESIAVGDEPFHKMYGEQFHPYVIGAAINVELALAKANLGSDMKVVVPCSSDSIQSESGLPSKGHFRPELNKTMSELL SLLDKHHSPFYVTISPFVSFQQDKNTSLDFALFKQAARPRSDSRRTYKNSFDMSYDTVVAALSAAGFPGMDIVVAKVGWPTDGSPNATSQTAEVFMKGLM DHLRGKSGSPLRPKSPPAETFIFSLLDENERSIASGNFERHWGVFTFDGQAKYHVDF |
Full Sequence |
---|
Protein Sequence Length: 446 Download |
MHPPILNFIF LLLAIAAATI FNRVEAVGVN WGTTASQPLP PRGVVGPLAC QAVESWVHDN 60 VTRYFSAGKS GVRIESIAVG DEPFHKMYGE QFHPYVIGAA INVELALAKA NLGSDMKVVV 120 PCSSDSIQSE SGLPSKGHFR PELNKTMSEL LSLLDKHHSP FYVTISPFVS FQQDKNTSLD 180 FALFKQAARP RSDSRRTYKN SFDMSYDTVV AALSAAGFPG MDIVVAKVGW PTDGSPNATS 240 QTAEVFMKGL MDHLRGKSGS PLRPKSPPAE TFIFSLLDEN ERSIASGNFE RHWGVFTFDG 300 QAKYHVDFGQ WTKGLENAQN VGYLSPKWCV VDNNKDMSNA SSRALDACSA ADCTALSPGG 360 SCSNISWPGN ITYAFNSYYQ QHDQRQGSCD FGGLGLVTTV DPSYGTCRFS VELNTSGAAG 420 SLLRICIFWW LIPLTMNNHL ILTLV* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 0.0004 | 222 | 299 | 82 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 5.0e-14 | 327 | 395 | 80 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 2.0e-29 | 327 | 409 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 2.0e-46 | 52 | 308 | 258 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABF95444.1 | 0 | 27 | 430 | 35 | 482 | Glycosyl hydrolases family 17 protein, expressed [Oryza sativa (japonica cultivar-group)] |
EMBL | CBI28434.1 | 0 | 23 | 416 | 19 | 456 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_200656.2 | 0 | 24 | 416 | 23 | 451 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
RefSeq | XP_002269108.1 | 0 | 24 | 416 | 23 | 459 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002313970.1 | 0 | 24 | 440 | 19 | 476 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3ur8_B | 9e-29 | 56 | 308 | 73 | 314 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 3ur8_A | 9e-29 | 56 | 308 | 73 | 314 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 3ur7_B | 9e-29 | 56 | 308 | 73 | 314 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 3ur7_A | 9e-29 | 56 | 308 | 73 | 314 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 4gzj_A | 2e-28 | 56 | 308 | 73 | 314 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |