Basic Information | |
---|---|
Species | Linum usitatissimum |
Cazyme ID | Lus10026798 |
Family | GH28 |
Protein Properties | Length: 402 Molecular Weight: 43969.3 Isoelectric Point: 8.6489 |
Chromosome | Chromosome/Scaffold: 361 Start: 757119 End: 759452 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 82 | 342 | 0 |
ACSLPKRSRIVLPIGTYLVHPVVLSGPCKSKIIFSIAGTIVAPQDPQAWRGMNHRRWLYFAKVNHLRFEGGTINGMGRQWWTNSCKTYKKNVSCVPLLLQ ALTFHRCKDLKVGNLRLVDSQQMHIAFTNCVHVSVSQLEVLVPAFTPNTDGIHISSSSVHVTNTVIKTGDDCISIVGNSSRINVKNVVCGPGHGISIGSL GKSNSTDFVESVSVDGAFLSNTQNGLRIKTWQGGSGKASDINFQNVHMENVSTQLSLIDST |
Full Sequence |
---|
Protein Sequence Length: 402 Download |
MKNSQLCCCY WKTPSVILLL SIVLIIVCAE GFESGLELQQ SGSASVIRRY RTRKVIYIHD 60 FGAAGDGVQN DTQALEDGWE IACSLPKRSR IVLPIGTYLV HPVVLSGPCK SKIIFSIAGT 120 IVAPQDPQAW RGMNHRRWLY FAKVNHLRFE GGTINGMGRQ WWTNSCKTYK KNVSCVPLLL 180 QALTFHRCKD LKVGNLRLVD SQQMHIAFTN CVHVSVSQLE VLVPAFTPNT DGIHISSSSV 240 HVTNTVIKTG DDCISIVGNS SRINVKNVVC GPGHGISIGS LGKSNSTDFV ESVSVDGAFL 300 SNTQNGLRIK TWQGGSGKAS DINFQNVHME NVSTQLSLID STAIPNPRVQ TSEGGVTESF 360 CWEAYGSSGG SVFPHPCFTS DEQFIKQNIP HQKISLFNLR R* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 4.0e-59 | 61 | 344 | 289 | + polygalacturonase | ||
PLN03003 | PLN03003 | 6.0e-60 | 58 | 332 | 279 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 2.0e-67 | 83 | 359 | 279 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 3.0e-82 | 51 | 356 | 312 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 3.0e-160 | 29 | 397 | 421 | + Probable polygalacturonase |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABD28401.1 | 0 | 29 | 389 | 32 | 440 | Glycoside hydrolase, family 28 [Medicago truncatula] |
GenBank | ABM67700.1 | 0 | 5 | 390 | 3 | 437 | polygalacturonase [Citrus sinensis] |
RefSeq | NP_565232.1 | 0 | 29 | 389 | 28 | 435 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002299601.1 | 0 | 1 | 397 | 1 | 447 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002517603.1 | 0 | 26 | 397 | 5 | 424 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 6e-16 | 152 | 341 | 117 | 312 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 0.000000000002 | 150 | 333 | 76 | 255 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.000000000002 | 150 | 333 | 76 | 255 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.000000000002 | 150 | 333 | 76 | 255 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 0.000000000002 | 150 | 333 | 76 | 255 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |