y
Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10027656 |
Family | CE8 |
Protein Properties | Length: 407 Molecular Weight: 45293.8 Isoelectric Point: 6.2806 |
Chromosome | Chromosome/Scaffold: 2 Start: 582817 End: 585620 |
Description | Plant invertase/pectin methylesterase inhibitor superfamily |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 96 | 389 | 0 |
TVAKDGSGDFKTINEAIKAIPEKYDGRYIIYVKQGVYEESVTIEKRMENVTIYGDGSQKSIVTGSKNFADGVRTLETATFVVLANGFVSQAMGYRNTAGA SKHQAVAIRVQGDKAVFINSRFEGYQDTLYAQNHRHFYKSCVISGTVDFIFGDAAAVFQNCLILLRKPMENQQNTITAQGRMDKYQSTGFVLQNCRIEAD KDLDGPAKDKVKSYLGRPWRDYSRTVVMESTIDLIEPEGWLAWEGEKGLKTLYYAEYGNKGPDSGTDKRVKWPGFHVINRDEATKFTVVPFIQG |
Full Sequence |
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Protein Sequence Length: 407 Download |
MSYQQTCIDG FPDGKAKTEM EKNFNSSKEF TSNSLAVVAT SDSFLSAVNN LIHGRRLLGN 60 EEDNDGDDQF PGWVSHEDRR MLKGAATADK PKPNKTVAKD GSGDFKTINE AIKAIPEKYD 120 GRYIIYVKQG VYEESVTIEK RMENVTIYGD GSQKSIVTGS KNFADGVRTL ETATFVVLAN 180 GFVSQAMGYR NTAGASKHQA VAIRVQGDKA VFINSRFEGY QDTLYAQNHR HFYKSCVISG 240 TVDFIFGDAA AVFQNCLILL RKPMENQQNT ITAQGRMDKY QSTGFVLQNC RIEADKDLDG 300 PAKDKVKSYL GRPWRDYSRT VVMESTIDLI EPEGWLAWEG EKGLKTLYYA EYGNKGPDSG 360 TDKRVKWPGF HVINRDEATK FTVVPFIQGD EWVDEAGAQV KVGLFN* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02301 | PLN02301 | 8.0e-145 | 6 | 404 | 401 | + pectinesterase/pectinesterase inhibitor | ||
PLN02468 | PLN02468 | 3.0e-151 | 2 | 404 | 404 | + putative pectinesterase/pectinesterase inhibitor | ||
PLN02314 | PLN02314 | 8.0e-154 | 4 | 397 | 409 | + pectinesterase | ||
pfam01095 | Pectinesterase | 4.0e-178 | 94 | 390 | 299 | + Pectinesterase. | ||
PLN02745 | PLN02745 | 0 | 1 | 405 | 409 | + Putative pectinesterase/pectinesterase inhibitor |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAA89480.1 | 0 | 1 | 404 | 192 | 596 | pectin methylesterase [Salix gilgiana] |
RefSeq | XP_002273499.1 | 0 | 1 | 393 | 190 | 582 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002324181.1 | 0 | 1 | 405 | 188 | 593 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002326319.1 | 0 | 1 | 404 | 191 | 597 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002516193.1 | 0 | 1 | 405 | 189 | 593 | Pectinesterase-1 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1xg2_A | 0 | 94 | 406 | 4 | 317 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1gq8_A | 0 | 93 | 404 | 7 | 319 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1qjv_B | 5e-23 | 94 | 315 | 5 | 246 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 5e-23 | 94 | 315 | 5 | 246 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 2ntq_B | 5e-23 | 94 | 315 | 5 | 246 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
JG075290 | 229 | 178 | 406 | 0 |
JG079147 | 213 | 195 | 407 | 0 |
JG080890 | 213 | 195 | 407 | 0 |
JG078228 | 213 | 195 | 407 | 0 |
JG078587 | 213 | 195 | 407 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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