| Basic Information | |
|---|---|
| Species | Linum usitatissimum |
| Cazyme ID | Lus10028104 |
| Family | CBM43 |
| Protein Properties | Length: 462 Molecular Weight: 50515.2 Isoelectric Point: 5.1158 |
| Chromosome | Chromosome/Scaffold: 132 Start: 1065302 End: 1067546 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CBM43 | 345 | 427 | 3.5e-24 |
| WCVMRPSARLDDPQVPLSVSYACSLADCTKLGYGTSCGNLDARGNISFAFNSYFQIQDQKDEACKFPNLSTIVKTDPSQGTCK | |||
| GH17 | 5 | 323 | 0 |
| IGANWGTQATHPLDPDIVVRLLRDNGIQKVKLFDADYDTLRALGKSGIEVMVGIPNDMLASIAAKVKNAEEWVSQNVSKHITTDNVNIRYVAVGNEPFLQ TYNGSFLRTTFPALRNVQSALIKAGLANQVKVTCPLNADVYESASGLPSGGDFRQDIHGYMLEIVKFLSETGSPFTVNIYPFISLYIDSNFPAEYAFFDG DSTPLNDGGMSYTNMFDANHDTLVHALEKNGFGNMPIIIGEIGWPTDGDRNANVELARRFNQGFMSRISGGKGSPMRPGPIDAYLFSLIDEDAKSIDPGN FERHWGIFTFDGQPKYLLN | |||
| Full Sequence |
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| Protein Sequence Length: 462 Download |
| MGSGIGANWG TQATHPLDPD IVVRLLRDNG IQKVKLFDAD YDTLRALGKS GIEVMVGIPN 60 DMLASIAAKV KNAEEWVSQN VSKHITTDNV NIRYVAVGNE PFLQTYNGSF LRTTFPALRN 120 VQSALIKAGL ANQVKVTCPL NADVYESASG LPSGGDFRQD IHGYMLEIVK FLSETGSPFT 180 VNIYPFISLY IDSNFPAEYA FFDGDSTPLN DGGMSYTNMF DANHDTLVHA LEKNGFGNMP 240 IIIGEIGWPT DGDRNANVEL ARRFNQGFMS RISGGKGSPM RPGPIDAYLF SLIDEDAKSI 300 DPGNFERHWG IFTFDGQPKY LLNLGTTNSG RLIPAKGLSY QERKWCVMRP SARLDDPQVP 360 LSVSYACSLA DCTKLGYGTS CGNLDARGNI SFAFNSYFQI QDQKDEACKF PNLSTIVKTD 420 PSQGTCKFDI MVQPYYGAAD RLATQLGFLA VALISLSSLW I* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5309 | COG5309 | 5.0e-6 | 237 | 315 | 79 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
| pfam07983 | X8 | 2.0e-12 | 344 | 415 | 79 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 4.0e-28 | 344 | 428 | 87 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 4.0e-77 | 5 | 323 | 322 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAL24251.1 | 0 | 2 | 457 | 19 | 475 | AT5g58090/k21l19_70 [Arabidopsis thaliana] |
| RefSeq | NP_200617.2 | 0 | 2 | 457 | 19 | 475 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
| RefSeq | XP_002309034.1 | 0 | 5 | 439 | 4 | 439 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002331390.1 | 0 | 5 | 437 | 14 | 447 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002530371.1 | 0 | 3 | 441 | 21 | 459 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1ghr_A | 0 | 5 | 324 | 1 | 306 | B Chain B, Structural Basis Of Gibberellin(Ga3)-Induced Della Recognition By The Gibberellin Receptor |
| PDB | 1aq0_B | 0 | 5 | 324 | 1 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
| PDB | 1aq0_A | 0 | 5 | 324 | 1 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
| PDB | 3ur8_B | 0 | 5 | 324 | 3 | 314 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
| PDB | 3ur8_A | 0 | 5 | 324 | 3 | 314 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| HO797198 | 431 | 3 | 433 | 0 |
| EY783741 | 278 | 100 | 377 | 0 |
| FY453511 | 287 | 38 | 324 | 0 |
| DY825554 | 294 | 133 | 426 | 0 |
| FY450006 | 277 | 91 | 367 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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