| Basic Information | |
|---|---|
| Species | Linum usitatissimum |
| Cazyme ID | Lus10028133 |
| Family | GT5 |
| Protein Properties | Length: 1054 Molecular Weight: 119708 Isoelectric Point: 5.1857 |
| Chromosome | Chromosome/Scaffold: 327 Start: 129608 End: 134819 |
| Description | starch synthase 4 |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GT5 | 555 | 1041 | 0 |
| HVIHIAAEMAPVAKVGGLGDVVSGLGKALQKRGHLVEIIIPKYDCMEYDRVYDLKALDKVVESYYDGKLYRNKIWVGIVEGLPVYFIEPHHPGKFFWRGQ FYGEQDDFKRFSYFSRAALELVFQAGKRPDIIHCHDWQTAFVAPLYWDIYTPKGLNSARICFTCHNFEYQGTAPASELASCGLDVHQLNRPDRMQDNFAR DRVNSVKGAVVFSNIVTTVSPTYAQEVRTAEGGKGLHSTLNFHSKKFIGILNGIDGDVWNPSSDSLLSVQYSANDLVGKAENKAALRRHLGLSTDNVRQP LVGCITRLVPQKGVHLIRHAIYRTLELGGQFVLLGSSPISHIQQEFEGIANQFRNNKNARLVLKYDEALSHSIYAASDMFIIPSIFEPCGLTQMIAMRYG AVPIVRKTGGLNDSVFDVDDETIDVKFRNGFTFMNPTEDGLNSALERAFKHYMKEEEEEGWEELVRKIMKMDFSWETSAAQYEELYS | |||
| Full Sequence |
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| Protein Sequence Length: 1054 Download |
| MAITTKQPSS CFIGQAFAGF SYSNSRNVRL WHPLHHQMLL PASCKMRHRN LRYKKRQVNK 60 TSTELPTPAA ESLSDDVNEQ ALSSNRVHNH PNHEIVPFVE ATASIVQQHN ASVEDTDTGE 120 EPEDRVNGEE PFDSKVEPEY FQDVDFEYLD GPTVSEEALS LALDPIGNGE NRLSSVQMED 180 LIGMTRSAEQ NIFLLNDDEF SALEDTDRIL SEKQSLQREI NGLETRLAET NARLKVAAQE 240 KVYVDLLGNQ LQKLRNELTH RSPAVGDVLR HPVNPNKEAD MLQNYAMEAL SEDMDSLRTE 300 NMFLKQDLEA LKAQLTAVKD TDLRVVTLEK ERSTLESSLK DLESKVSTSQ EDVSKLSSLR 360 VEYEDLSGRV ESLQTLLNKA TGQADQAILV LQQNQELRKK VDKLEECLEE ANIYKLSSEK 420 LQQYNELMQQ KIKLLEDHLM RSDEEIHSYV QLYQESVEEF QDTLNNLIEE RKKRALDKPV 480 DDMPWELWSR LLLKVDGWLL EGKISTDDAK LLRDRVWKRD RKIYDAYMQC RKNDEFDTIS 540 TFLKLISSPK SPGLHVIHIA AEMAPVAKVG GLGDVVSGLG KALQKRGHLV EIIIPKYDCM 600 EYDRVYDLKA LDKVVESYYD GKLYRNKIWV GIVEGLPVYF IEPHHPGKFF WRGQFYGEQD 660 DFKRFSYFSR AALELVFQAG KRPDIIHCHD WQTAFVAPLY WDIYTPKGLN SARICFTCHN 720 FEYQGTAPAS ELASCGLDVH QLNRPDRMQD NFARDRVNSV KGAVVFSNIV TTVSPTYAQE 780 VRTAEGGKGL HSTLNFHSKK FIGILNGIDG DVWNPSSDSL LSVQYSANDL VGKAENKAAL 840 RRHLGLSTDN VRQPLVGCIT RLVPQKGVHL IRHAIYRTLE LGGQFVLLGS SPISHIQQEF 900 EGIANQFRNN KNARLVLKYD EALSHSIYAA SDMFIIPSIF EPCGLTQMIA MRYGAVPIVR 960 KTGGLNDSVF DVDDETIDVK FRNGFTFMNP TEDGLNSALE RAFKHYMKEE EEEGWEELVR 1020 KIMKMDFSWE TSAAQYEELY STSVATAKAA VEL* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02316 | PLN02316 | 1.0e-137 | 550 | 1040 | 498 | + synthase/transferase | ||
| PLN02939 | PLN02939 | 0 | 4 | 1050 | 1049 | + transferase, transferring glycosyl groups | ||
| TIGR02095 | glgA | 0 | 554 | 1041 | 491 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
| cd03791 | GT1_Glycogen_synthase_DULL1_like | 0 | 555 | 1040 | 491 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
| PRK00654 | glgA | 0 | 554 | 1040 | 489 | + glycogen synthase; Provisional | ||
| Gene Ontology | |
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| GO Term | Description |
| GO:0009058 | biosynthetic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAA16796.1 | 0 | 315 | 1049 | 303 | 1066 | starch synthase-like protein [Arabidopsis thaliana] |
| RefSeq | NP_193558.3 | 0.00008 | 3 | 212 | 1 | 219 | ATSS4; transferase, transferring glycosyl groups [Arabidopsis thaliana] |
| RefSeq | NP_193558.3 | 0 | 315 | 1049 | 303 | 1035 | ATSS4; transferase, transferring glycosyl groups [Arabidopsis thaliana] |
| RefSeq | XP_002274716.1 | 0 | 9 | 1050 | 6 | 1008 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002298514.1 | 0 | 153 | 1050 | 9 | 884 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1rzv_B | 0 | 554 | 1041 | 1 | 473 | A Chain A, Crystal Structure Of The Glycogen Synthase From Agrobacterium Tumefaciens (Non-Complexed Form) |
| PDB | 1rzv_A | 0 | 554 | 1041 | 1 | 473 | A Chain A, Crystal Structure Of The Glycogen Synthase From Agrobacterium Tumefaciens (Non-Complexed Form) |
| PDB | 1rzu_B | 0 | 554 | 1041 | 1 | 473 | A Chain A, Crystal Structure Of The Glycogen Synthase From A. Tumefaciens In Complex With Adp |
| PDB | 1rzu_A | 0 | 554 | 1041 | 1 | 473 | A Chain A, Crystal Structure Of The Glycogen Synthase From A. Tumefaciens In Complex With Adp |
| PDB | 3d1j_A | 0 | 554 | 1040 | 1 | 473 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| GW865616 | 298 | 660 | 957 | 0 |
| GO851132 | 333 | 629 | 961 | 0 |
| CF828776 | 286 | 679 | 964 | 0 |
| EL448877 | 316 | 482 | 797 | 0 |
| CB893818 | 281 | 553 | 833 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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