Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10028212 |
Family | PL4 |
Protein Properties | Length: 648 Molecular Weight: 73647 Isoelectric Point: 4.947 |
Chromosome | Chromosome/Scaffold: 327 Start: 581835 End: 585919 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 5 | 618 | 0 |
GVQLHINDRHVVMDNGIVQVTMSNPQGIVTGIRFGGLDNLLEVLNEETNRGYWDLVWSSPGTAGTFDVIKGTSFEVITETEEQVEVSFTRKWDPSLKGKQ VPLNIDKRFIMLSGSSGFYSYAIYHHLQDWPAFSLAETRIAFKLRKDKFHYMAASENRQRYMPLPDDRIPPRGQPLAYPEAVLMVNPVEVELKGEVDDKY QYSCDNKDNKVHGWMCMDPPIGFWQITPTDEFRSGGPVKQNLTSHVGPTTLAMFLSAHYAGEDLVPKFGEGEEWKKVFGPIFMYFNTTSPIDDDIPPSLW EDAKSQMMAEVESWPYTFPASDDYQKLQQRGNVTGRLLVHDRFVSDDSIYASGAYVGLAPPGDVGSWQRECKNYQFWTKTDEDGFFSINHIITGDYNLYA WVPGFIGDYKNLNLVSITSGCYVDMGDMVFEPPRNGPTLWEIGIPDRSASEFYVPDPNPKYINKLFVNHPEKFRQYGLWERYEELYPNEDLVYNVGTSDY TKDWFFAQVTRKRENNTYQGTTWSIKFALDNVEKNGIYKLRVAIASATFSELQVRINDPKVVPVFSSGLIGRDNSIARHGIHGLYWLFNVDVAGSKLVAG INTIYLTQPRATSP |
Full Sequence |
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Protein Sequence Length: 648 Download |
MEPTGVQLHI NDRHVVMDNG IVQVTMSNPQ GIVTGIRFGG LDNLLEVLNE ETNRGYWDLV 60 WSSPGTAGTF DVIKGTSFEV ITETEEQVEV SFTRKWDPSL KGKQVPLNID KRFIMLSGSS 120 GFYSYAIYHH LQDWPAFSLA ETRIAFKLRK DKFHYMAASE NRQRYMPLPD DRIPPRGQPL 180 AYPEAVLMVN PVEVELKGEV DDKYQYSCDN KDNKVHGWMC MDPPIGFWQI TPTDEFRSGG 240 PVKQNLTSHV GPTTLAMFLS AHYAGEDLVP KFGEGEEWKK VFGPIFMYFN TTSPIDDDIP 300 PSLWEDAKSQ MMAEVESWPY TFPASDDYQK LQQRGNVTGR LLVHDRFVSD DSIYASGAYV 360 GLAPPGDVGS WQRECKNYQF WTKTDEDGFF SINHIITGDY NLYAWVPGFI GDYKNLNLVS 420 ITSGCYVDMG DMVFEPPRNG PTLWEIGIPD RSASEFYVPD PNPKYINKLF VNHPEKFRQY 480 GLWERYEELY PNEDLVYNVG TSDYTKDWFF AQVTRKRENN TYQGTTWSIK FALDNVEKNG 540 IYKLRVAIAS ATFSELQVRI NDPKVVPVFS SGLIGRDNSI ARHGIHGLYW LFNVDVAGSK 600 LVAGINTIYL TQPRATSPFQ GIMYDYIRLE APSFSTSVDS FKKATNV* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd10316 | RGL4_M | 5.0e-29 | 333 | 432 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 4.0e-52 | 444 | 630 | 189 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 4.0e-68 | 11 | 293 | 289 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 3.0e-93 | 1 | 200 | 200 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI19298.1 | 0 | 1 | 644 | 1 | 656 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_172460.6 | 0 | 17 | 633 | 1 | 617 | lyase [Arabidopsis thaliana] |
RefSeq | XP_002285626.1 | 0 | 17 | 644 | 1 | 627 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
RefSeq | XP_002301112.1 | 0 | 17 | 631 | 1 | 613 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527353.1 | 0 | 1 | 636 | 1 | 637 | lyase, putative [Ricinus communis] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DW479599 | 294 | 1 | 291 | 0 |
DW479600 | 296 | 1 | 293 | 0 |
DT552229 | 294 | 17 | 307 | 0 |
DY293973 | 352 | 1 | 348 | 0 |
GW864372 | 313 | 144 | 456 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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