| Basic Information | |
|---|---|
| Species | Linum usitatissimum |
| Cazyme ID | Lus10028243 |
| Family | CBM22 |
| Protein Properties | Length: 1142 Molecular Weight: 126007 Isoelectric Point: 6.7323 |
| Chromosome | Chromosome/Scaffold: 327 Start: 791626 End: 796612 |
| Description | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CBM22 | 74 | 211 | 8.8e-28 |
| NIIVNHDFSQGLQSWHPNSCDGFVVSSNPDRPGLLPRLVGGYAVVSNRKQWWEGIEQDITARISPGLVYSVAAVVGVSGNIQGSTEVIATLKLEQQGTGI QYLRVGKATVSKGQLEMLQGNFCLSTIPDRVVFYIEGP | |||
| CBM22 | 245 | 384 | 2.1e-30 |
| NIILNSDFSQALESWHPNNCDGYVVSIDLGHPGRHLVDEVGSYAVVSNRKERWQGLEQDITSKVSPGLTYLVSAFVGVSGQIQGSSEEIIATLKCEYQGS ATSYLLVGKTSVCKGKWKKLEGRFSLSNMPERVVFYIEGP | |||
| CBM22 | 416 | 553 | 2.3e-33 |
| NLIVNPNFEDGSNNWSGRGGCKIAVQNSAADGKIVPQSGKFFAVATGRTQSWHGIQQEITGRVQRKLAYEVNAIVRIYGNNVTSADVRATLWVQNPDNRE QYIGIANLQANDSDWIQLQGKFLLNGSPKKIVVYLEGP | |||
| CBM22 | 588 | 731 | 8.7e-40 |
| NILENSNLSDGTNGWFPLGNCSLSVATGSPHVLPPMARESLGVHEPLSGRCIAVTKRTQTWMGPAQMITDKVKLFLTYQIAAWVKIGPTGANSGPQNVNV ALGVDNNWVNGGQVEINDDRWHEIGSSFRIEKQPSKVMVYIQGP | |||
| GH10 | 786 | 1064 | 0 |
| KVRQTQNSFPLGTCISRTNIDNEDYVNFFVNNFNWAVFGNELKWYWTESQQGSLNYKDADDMVELCKSHNIEMRGHCIFWDVDGTVQQWIKSLNKDDLMK AVQNRLTDLLTRYKGKFKHYDVNNEMLHGSFYPDRLGKDIRPYMFKTANQLDPSATLFVNDYHVEDGCDTRSNPERYIEHILNLQEQGAPVGGVGIQGHI DSPVGPVVCSALNNLGILGLPIWFTELDVSSVNEYIRAEDLEVMLREAYAHPSVEGIMLWGFWELFMSRENSHLVDAEG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 1142 Download |
| MRRITVCCFT SQSPKKNRKK TKQIQEAKPS TEESMERPQM KKNDIGGAGS SETADDSMGN 60 LTNSIHFPEH PKRNIIVNHD FSQGLQSWHP NSCDGFVVSS NPDRPGLLPR LVGGYAVVSN 120 RKQWWEGIEQ DITARISPGL VYSVAAVVGV SGNIQGSTEV IATLKLEQQG TGIQYLRVGK 180 ATVSKGQLEM LQGNFCLSTI PDRVVFYIEG PSAGADILVA SVNVCSSGPA INDVLDEKHR 240 NVSTNIILNS DFSQALESWH PNNCDGYVVS IDLGHPGRHL VDEVGSYAVV SNRKERWQGL 300 EQDITSKVSP GLTYLVSAFV GVSGQIQGSS EEIIATLKCE YQGSATSYLL VGKTSVCKGK 360 WKKLEGRFSL SNMPERVVFY IEGPPPGVNL LIKSVLIGNS MCERAGHGSS ANEDENLIVN 420 PNFEDGSNNW SGRGGCKIAV QNSAADGKIV PQSGKFFAVA TGRTQSWHGI QQEITGRVQR 480 KLAYEVNAIV RIYGNNVTSA DVRATLWVQN PDNREQYIGI ANLQANDSDW IQLQGKFLLN 540 GSPKKIVVYL EGPPPGTDIL VNSFTLKHAQ KVPPSPLPII ENPAFGVNIL ENSNLSDGTN 600 GWFPLGNCSL SVATGSPHVL PPMARESLGV HEPLSGRCIA VTKRTQTWMG PAQMITDKVK 660 LFLTYQIAAW VKIGPTGANS GPQNVNVALG VDNNWVNGGQ VEINDDRWHE IGSSFRIEKQ 720 PSKVMVYIQG PAGGTDFMVG GLQIFPVDRV ARFKHLRRLT DKIRKRDVTL KFTGADSSSL 780 HGTLVKVRQT QNSFPLGTCI SRTNIDNEDY VNFFVNNFNW AVFGNELKWY WTESQQGSLN 840 YKDADDMVEL CKSHNIEMRG HCIFWDVDGT VQQWIKSLNK DDLMKAVQNR LTDLLTRYKG 900 KFKHYDVNNE MLHGSFYPDR LGKDIRPYMF KTANQLDPSA TLFVNDYHVE DGCDTRSNPE 960 RYIEHILNLQ EQGAPVGGVG IQGHIDSPVG PVVCSALNNL GILGLPIWFT ELDVSSVNEY 1020 IRAEDLEVML REAYAHPSVE GIMLWGFWEL FMSRENSHLV DAEGELNEAG RRFLALKKEW 1080 LSHASGHVDE HHIDEQAGFG FRGFHGTYTV EIVGRSKKVT KTFVVEKGDT PLVLSIDLSS 1140 S* 1200 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02018 | CBM_4_9 | 4.0e-19 | 245 | 386 | 144 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| pfam02018 | CBM_4_9 | 4.0e-19 | 416 | 557 | 144 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| COG3693 | XynA | 3.0e-32 | 825 | 1047 | 247 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| pfam00331 | Glyco_hydro_10 | 9.0e-73 | 792 | 1077 | 306 | + Glycosyl hydrolase family 10. | ||
| smart00633 | Glyco_10 | 2.0e-78 | 827 | 1073 | 268 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAX33301.1 | 0 | 47 | 561 | 9 | 521 | putative endo-1,4-beta-xylanase [Populus tremula x Populus tremuloides] |
| GenBank | AAX33301.1 | 0.00000007 | 74 | 224 | 372 | 526 | putative endo-1,4-beta-xylanase [Populus tremula x Populus tremuloides] |
| GenBank | AAX33301.1 | 0 | 233 | 1138 | 19 | 915 | putative endo-1,4-beta-xylanase [Populus tremula x Populus tremuloides] |
| RefSeq | XP_002301133.1 | 0 | 74 | 1138 | 2 | 1049 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002301133.1 | 0 | 415 | 739 | 1 | 309 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1xyz_B | 1e-27 | 779 | 1047 | 22 | 307 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
| PDB | 1xyz_A | 1e-27 | 779 | 1047 | 22 | 307 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
| PDB | 1i1x_A | 3e-27 | 817 | 1046 | 39 | 268 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
| PDB | 1i1w_A | 3e-27 | 817 | 1046 | 39 | 268 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| PDB | 2bnj_A | 9e-27 | 817 | 1046 | 39 | 268 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| JG217642 | 287 | 4 | 290 | 0 |
| JG217642 | 188 | 245 | 430 | 0 |
| JG219265 | 255 | 474 | 728 | 0 |
| JG217642 | 207 | 416 | 617 | 4e-18 |
| JG217642 | 209 | 588 | 787 | 0.00002 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
