Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10028766 |
Family | GH28 |
Protein Properties | Length: 490 Molecular Weight: 53067.2 Isoelectric Point: 4.7903 |
Chromosome | Chromosome/Scaffold: 540 Start: 142480 End: 144968 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 91 | 441 | 0 |
SSAGGSLLYVPPGRWLTGSFNITGSHFTLYLDQDALLLASLDEDQYPVIEPLPSYGRGRDADGGRYSSLIFGTNLTDVVITGANGTIDGQGELWWKKYRA GELNFTRPYLIELMYSTDIQISNLTLMNSPSWNVHPVYSSNILVKGLTILAPVTSANTDGINPDSCTNTRIEDCFIVSGDDCVAVKSGWDEYGTAFGMPT KHLVIKRLTCISPFSATIALGSEMSGGIQDVRAEDITAINTESGVRIKTAVGRGGYVKDIYVRRMTMKTMKWAFWMTGNYGSHPDNNYDPQAIPIVQNIN YRDMVAENVTMAARLEGIGGDPFTGICISNVTIGLTEKAKKLQWNCTDVAG |
Full Sequence |
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Protein Sequence Length: 490 Download |
MKFSSPSPKL FQVMEVTAAV VCAVLALVIM AGSSSSVEAM KKSMELDYFE FTGKDCRANV 60 ASITDFGGIG DGNTSNTKAF QAAMDSLANY SSAGGSLLYV PPGRWLTGSF NITGSHFTLY 120 LDQDALLLAS LDEDQYPVIE PLPSYGRGRD ADGGRYSSLI FGTNLTDVVI TGANGTIDGQ 180 GELWWKKYRA GELNFTRPYL IELMYSTDIQ ISNLTLMNSP SWNVHPVYSS NILVKGLTIL 240 APVTSANTDG INPDSCTNTR IEDCFIVSGD DCVAVKSGWD EYGTAFGMPT KHLVIKRLTC 300 ISPFSATIAL GSEMSGGIQD VRAEDITAIN TESGVRIKTA VGRGGYVKDI YVRRMTMKTM 360 KWAFWMTGNY GSHPDNNYDP QAIPIVQNIN YRDMVAENVT MAARLEGIGG DPFTGICISN 420 VTIGLTEKAK KLQWNCTDVA GITSGVTPKP CDLLPDQGQE KKASCNFPED TLAIEDIQVH 480 SCSYSKRYL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 1.0e-16 | 175 | 451 | 297 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 7.0e-21 | 62 | 423 | 369 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 4.0e-21 | 58 | 361 | 306 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 2.0e-25 | 160 | 423 | 271 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 1.0e-44 | 60 | 358 | 323 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002278930.1 | 0 | 41 | 489 | 33 | 480 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002299511.1 | 0 | 7 | 488 | 6 | 479 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002301370.1 | 0 | 41 | 489 | 23 | 470 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002303605.1 | 0 | 14 | 483 | 1 | 465 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002509850.1 | 0 | 41 | 489 | 33 | 480 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 9.94922e-44 | 61 | 423 | 28 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 9.94922e-44 | 61 | 423 | 28 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 9.94922e-44 | 61 | 423 | 28 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 9.94922e-44 | 61 | 423 | 28 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 0.00000000000002 | 115 | 397 | 61 | 336 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |