Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10029121 |
Family | GH28 |
Protein Properties | Length: 480 Molecular Weight: 52152.1 Isoelectric Point: 8.3875 |
Chromosome | Chromosome/Scaffold: 376 Start: 628975 End: 631928 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 98 | 420 | 0 |
TAACQVSGARIQIPSGFKFLINPISFQGPCIPNLILQVDGTLLAPPQVGQWPKSSLFQWLNFKWVHNFTIQGSGTLDGQGSQWWTPSSLYFIQKMSRYIP DMKPTALRFYSSYGVTVRDITITNSPQCHLKFDFSKGIKVDNITILSPEYSPNTDGIHLQSTQDAEIHHSNIGCGDDCVSIQTGCSNIHLHHINCSPGHG ISLGSLGKGRTAACVSNIVVDNISLQNTLAGVRIKTWQGGVGSVKNITFSNIQVSQVKYPIIIDQFYCDKHTCRNQTESVAISGVRYDRIIGTYSVQPIH LACSSTVPCVDVDLVNIQLKPSE |
Full Sequence |
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Protein Sequence Length: 480 Download |
MFTNRTNSSP LFSLLFLITT ILLFTVFSTT PLVDARKHHN HSKHSKHRSG SSSSISINPP 60 ADLAPYSPTH STTFDILSFG ARGDGSTDDS KALGAAWTAA CQVSGARIQI PSGFKFLINP 120 ISFQGPCIPN LILQVDGTLL APPQVGQWPK SSLFQWLNFK WVHNFTIQGS GTLDGQGSQW 180 WTPSSLYFIQ KMSRYIPDMK PTALRFYSSY GVTVRDITIT NSPQCHLKFD FSKGIKVDNI 240 TILSPEYSPN TDGIHLQSTQ DAEIHHSNIG CGDDCVSIQT GCSNIHLHHI NCSPGHGISL 300 GSLGKGRTAA CVSNIVVDNI SLQNTLAGVR IKTWQGGVGS VKNITFSNIQ VSQVKYPIII 360 DQFYCDKHTC RNQTESVAIS GVRYDRIIGT YSVQPIHLAC SSTVPCVDVD LVNIQLKPSE 420 PSMSSSLAIG SGGLFQQGLC QNSYGKSEGP LVPSSIDYCL RKGSDYVKRI ARSHEHAVC* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 1.0e-76 | 69 | 447 | 385 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 6.0e-80 | 108 | 424 | 318 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03010 | PLN03010 | 3.0e-81 | 74 | 416 | 350 | + polygalacturonase | ||
PLN02218 | PLN02218 | 6.0e-86 | 72 | 437 | 371 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 5.0e-98 | 79 | 474 | 400 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_189293.1 | 0 | 34 | 475 | 29 | 465 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002266099.1 | 0 | 34 | 475 | 29 | 473 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002312682.1 | 0 | 36 | 479 | 31 | 466 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002315680.1 | 0 | 74 | 467 | 1 | 378 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527898.1 | 0 | 14 | 476 | 10 | 475 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 6e-26 | 164 | 368 | 110 | 318 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 4e-20 | 164 | 402 | 69 | 306 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 4e-20 | 164 | 402 | 69 | 306 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 4e-20 | 164 | 402 | 69 | 306 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 4e-20 | 164 | 402 | 69 | 306 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |